Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g731 ATGGAACCTGGAGAGGATTGCTGCGTTAAGGTTGCGGTTCACATCCGACCACTAATCGGTGATGAGAGGCTTCAAGGGTGTAAAGACTGTGTCACTGTCATTCCTGGAAAGCCTCAGGTACAAATTGGAACACATTCCTTTACGTTTGATCATGTCTACGGGAGCACTGGTTCTTCTTCATCTGCCATGTTTGAGGAATGTGTTGCTCCACTTGTTGATGGTCTATTCCAAGGATATAATGCTACCGTCCTTGCTTATGGTCAGACAGGATCTGGGAAAACATACACCATGGGCACTGGCTTCAAAGACAGTTCTCAAATGGGACTAATCCCTCAAGTGATGAATGCTTTGTTCAACAAGATTGAAACTTTGAAGCATCAAACTGAGTTCCAATTGCATGTGTCCTTCATTGAGATTTTAAAAGAAGAAGTACGAGACTTGCTGGATCCCAGTTCTGTGAACAAATCAGAGACTGCAAATGGGCACACAGGAAAAGTACCTGTCCCCGGGAAACCACCGATACAAATTCGTGAGACATCAAATGGTGTTATTACATTGGCAGGGTCTACTGAAATTGGTGTCCGTACATTAAAAGAAATGGCAGCTTGCCTAGAACAAGGATCACTGAGCAGGGCAACAGGAAGTACAAATATGAACAATCAATCAAGTCGCTCGCATGCCATCTTCACCATCACATTAGAGCAAATGAATAAGCTCAATCCTGCTTTTCCTAGTGATAGTGGTCTTAGTGAGAGTATGAGTGAAGAATATCTATGTGCCAAGTTGCATTTAGTAGACCTTGCTGGATCAGAACGAGCTAAAAGAACGGGTTCGGATGGTCTACGATTTAAGGAAGGGGTTCACATTAACAAGGGCCTTCTTGCACTTGGCAACGTCATTAGTGCACTTGGTGATGAGAAAAAAAGGAAAGAAGGCGTTCATGTTCCTTATCGGGACAGTAAACTTACTCGGCTTTTGCAGGATTCACTTGGTGGTAACAGCAGAACTGTCATGATAGCCTGCATTAGTCCTGCTGATATAAATGCTGAAGAAACTCTGAACACCCTAAAGTATGCAAATCGTGCTCGCAATATCCAAAATAAGCCCGTCGTCAACAGAGATCCAATATCCAATGAGATGTTAAAGATGCGCCAACAACTAGAGTATTTGCAGGCAGAACTGTGTGCACGTGGAGGAGGTGCTTCATCTGATGAAACACAGGTTCTCAAGGAAAGGATTGCTTGGCTTGAAGCAACCAATGAGGACCTCTGTCGGGAACTTCATCAATACCGCAGTAGATGCCATGTTACAGAACAATGTGAAACAGATGCCCAAGATGTTCACACCTGTTCAGTGAAAAGTGATGGGCTTAAAAGGGGCTTGTCTAGTGTGGATTCATCTGATTATCAAATGGGTGAAACCATAATGGCAGGGGATTCCAGGGAAATGGATGAAGAAGCAGCAAAAGAATGGGAACATACACTGCTGCAAAATACAATGGACAAAGAGTTGAATGAGCTAAACAAACGTTTAGAGCAAAAGGAGACGGAGATGAAACTTTTTGGAGGGCTTGACACAGTGGCACTTAAGCAGCACTTTGGAAAGAAAATAGTGGAACTAGAGGAGGAGAAAAGAACAGTGCAGCAAGAGAGAGATCGTCTGTTGGCTGAAGTTGAAAACCGTGCTGCTAATTCTGATGGGCAAGCACAAAAATTGCAAGATATTCATGCCCAGAAATTAAAAACACTTGAGGCACAGATACTGGATCTTAAGAAGAAGCAAGAGAGCCAGGTTCAACTTTTGAAGGAAAAACAAAAAAGTGATGAAGCAGCAAAGCGCTTGCAAGATGAAATACAATTTATCAAGGCGCAAAAGGTTCAATTGCAACAAAAGATAAAACAAGAGGCTGAACAGTTTCGACAGTGGAAGGCCTCTCGAGAGAAGGAACTGCTGCAGTTACGGAAGGAGGGGAGGCGGAATGAGTACGAAAGGCATAAACTGCAGACCCTAAATCAGCGTCAAAAAATGGTTCTTCAGCGAAAGACAGAGGAAGCTGCTATGGCCACCAAAAGGCTAAAAGAGTTGCTAGAAGCTCGCAAGTCTTCAGCACGTGAAAACTCAGGTATTACCAATGGAAATGGAACAAATGGGCAGAGCAATGAGAAATCTCTACAACGCTGGCTTGATCATGAGCTAGAAGTCATGGTGAATGTGCATGAAGTTCGTTTTGAATATGAGAAGCAAAGCCAAGTACGAGCTGCACTGGCAGAAGAGTTAGCAGTGCTGAAACAAGTGGATGAGTTTGCTTTGAAGGGGCTTAGTCCTCCACGAGGAAAGAATGGACTTTCTAGAGTGTCCTCCATGTCACCAAATGCAAGGATGGCAAGAATATCTTCTCTTGAGAACATGCTCAGCATTTCCTCAAATTCACTTGTGGCAATGGCTTCACAACTTTCAGAGGCAGAAGAAAGGGAGCGTGCTTTCACTAGCCGTGGACGTTGGAATCAGTTGCGATCAATGGGAGATGCTAAAAGCTTGCTTCAATATATGTTCAATTCTGTTGCAGACACAAGGTGCCAGTTATGGGAGAAGGAATTAGAAATCAAAGAAATGAAAGACCAACTGAAAGAACTTGTAGGTCTACTACGACAGAGTGAATTACGAAGAAAGGAAGTTGAGAAGGAGCTAAAATTGAGAGAACAAGCTGTTGCCATTGCACTGGCTACACAAGCTTCTGCTGGCAATGTTCAGGAGAAGTCGCAGAGCTCATTGAAACACTTTGCTGATGAAATGAGCGGTCCCTTGTCCCCAATGTCTGTCCCAGCACAGAAACAGCTTAAATATACAGCTGGAATTGCTAATGGCTTGGTCAGGGAGCGGGTAGCTTTTATAGATCAGACACGAAAGATGGTACCAGTTGGACCATTGTCAATGAAGAAACTAGCTGTAGTAGGACAAGCTGGGAAGCTGTGGAGATGGAAAAGGAGTCATCACCAGTGGCTATTACAGTTCAAATGGAAGTGGCAGAAACCATGGAGACTCTCAGAATGGATTAGGCACAGTGATGAAACAATCATGAGGGCAAGGCCCCGTACACAGGTTCTGACAGACAAGCTGGGAAGCTATGGAAATGGAAAAGGAGTCGTCAACAGTGGCTGTTACAGTTCAAATGGAAGTGGCAGAAACCATAGAGACTCTCGGAATGGGTTAGGCACAGTGATGAAACAATCATGA 3234 43.94 MEPGEDCCVKVAVHIRPLIGDERLQGCKDCVTVIPGKPQVQIGTHSFTFDHVYGSTGSSSSAMFEECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDSSQMGLIPQVMNALFNKIETLKHQTEFQLHVSFIEILKEEVRDLLDPSSVNKSETANGHTGKVPVPGKPPIQIRETSNGVITLAGSTEIGVRTLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMNKLNPAFPSDSGLSESMSEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDPISNEMLKMRQQLEYLQAELCARGGGASSDETQVLKERIAWLEATNEDLCRELHQYRSRCHVTEQCETDAQDVHTCSVKSDGLKRGLSSVDSSDYQMGETIMAGDSREMDEEAAKEWEHTLLQNTMDKELNELNKRLEQKETEMKLFGGLDTVALKQHFGKKIVELEEEKRTVQQERDRLLAEVENRAANSDGQAQKLQDIHAQKLKTLEAQILDLKKKQESQVQLLKEKQKSDEAAKRLQDEIQFIKAQKVQLQQKIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQTLNQRQKMVLQRKTEEAAMATKRLKELLEARKSSARENSGITNGNGTNGQSNEKSLQRWLDHELEVMVNVHEVRFEYEKQSQVRAALAEELAVLKQVDEFALKGLSPPRGKNGLSRVSSMSPNARMARISSLENMLSISSNSLVAMASQLSEAEERERAFTSRGRWNQLRSMGDAKSLLQYMFNSVADTRCQLWEKELEIKEMKDQLKELVGLLRQSELRRKEVEKELKLREQAVAIALATQASAGNVQEKSQSSLKHFADEMSGPLSPMSVPAQKQLKYTAGIANGLVRERVAFIDQTRKMVPVGPLSMKKLAVVGQAGKLWRWKRSHHQWLLQFKWKWQKPWRLSEWIRHSDETIMRARPRTQVLTDKLGSYGNGKGVVNSGCYSSNGSGRNHRDSRNGLGTVMKQS* 1078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8429671 8444912 - Vvi18g731 Vvi18g731 780434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g731 1077 Coils Coil 530 593 - -
Vvi18g731 1077 ProSiteProfiles Kinesin motor domain profile. 8 365 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g731 1077 Coils Coil 597 645 - -
Vvi18g731 1077 PRINTS Kinesin heavy chain signature 78 99 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g731 1077 PRINTS Kinesin heavy chain signature 216 233 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g731 1077 PRINTS Kinesin heavy chain signature 261 279 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g731 1077 PRINTS Kinesin heavy chain signature 315 336 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g731 1077 SMART kinesin_4 6 373 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g731 1077 Coils Coil 497 517 - -
Vvi18g731 1077 CDD KISc_KIF4 7 366 - -
Vvi18g731 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 396 IPR027417 -
Vvi18g731 1077 ProSitePatterns Kinesin motor domain signature. 260 271 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi18g731 1077 MobiDBLite consensus disorder prediction 151 175 - -
Vvi18g731 1077 MobiDBLite consensus disorder prediction 698 722 - -
Vvi18g731 1077 Pfam Kinesin motor domain 39 365 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g731 1077 MobiDBLite consensus disorder prediction 703 722 - -
Vvi18g731 1077 Coils Coil 854 902 - -
Vvi18g731 1077 Gene3D Kinesin motor domain 2 393 IPR036961 -
Vvi18g731 1077 MobiDBLite consensus disorder prediction 1053 1077 - -
Vvi18g731 1077 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 2 1036 - -
Vvi18g731 1077 Coils Coil 678 698 - -
Vvi18g731 1077 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-LIKE PROTEIN 2 1036 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g731 - - - vvi:100255840 2092.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g1025 Vvi18g731 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g731 Blo01g01519 . Bda01g00576 . Bpe02g00438 . . Bma01g02265 . . Cma01g01823 Cma09g00251 Car01g01425 . . Cpe06g00172 . . . . . . . . . . . . . . . Cone4ag1592 . . . Lsi04g01531 . . . Blo17g00895 . . . . . . . . Cmo01g01880 Cmo09g00243 . . . Car09g00208 . Cpe02g00191 Bhi09g03295 . . . . Mch11g0322 . Cla05g02066 Cam05g2217 Cec05g2236 Cco05g2277 Clacu05g2210 Cmu05g2076 Cre05g2202 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005992 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 0 2 2 38