Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g735 ATGGGAAGCATGAAGGTGCATCAGTTCGCACGTGGATTCTGGGAGCACGAACCCTCCCTCACGCTTGGCTGCAAGCGTTTACGCCCTCTTGCTCCCAAGCTGGCCAACAGTGACAGTGTCGCTGCTTTCGATCTCAAGAGCTTCATTAGACCTGAAAGTGGCCCCAGGAAGCTTGGATGCTCTGATGATAAGAGAGATTCACCTCAGGTGGAAACACATCCAGGTGGGACGCGGTGGAATCCAACCCAGGAACAGATTGGGATCTTGGAGATGCTGTATAAAAGTGGAATGCGCACTCCCAATGCACAGCAAATAGAACAAATCACTGCACAGCTTGGAAAGTACGGGAAGATCGAAGGCAAGAATGTGTTTTATTGGTTCCAAAACCACAAAGCACGGGAGAGACAGAAGCAGAAGCGCAACAGTTTGGGTCTCGGCCACTGTCCCAGGACTCCCACATCCATAACTACAATAACCTTGGATACCAGGGTGGAAGTGGGAAGAGAAGAAGATAGTCCAAACAAGAGAAAGTGTAAGAGCTGGACGTTTGAAACGGTGGAAGAAAATAACAGATACTACAGAGAGGAGGGAGATAAGACTCTGGAGCTTTTCCCGTTGCACCCGGAAGGCAGATGA 636 49.84 MGSMKVHQFARGFWEHEPSLTLGCKRLRPLAPKLANSDSVAAFDLKSFIRPESGPRKLGCSDDKRDSPQVETHPGGTRWNPTQEQIGILEMLYKSGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLGHCPRTPTSITTITLDTRVEVGREEDSPNKRKCKSWTFETVEENNRYYREEGDKTLELFPLHPEGR* 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8514130 8515605 + Vvi18g735 Vvi18g735 780438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g735 211 MobiDBLite consensus disorder prediction 56 71 - -
Vvi18g735 211 MobiDBLite consensus disorder prediction 54 80 - -
Vvi18g735 211 Gene3D - 77 142 - -
Vvi18g735 211 Pfam Homeodomain 77 136 IPR001356 GO:0003677
Vvi18g735 211 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 211 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Vvi18g735 211 CDD homeodomain 77 138 IPR001356 GO:0003677
Vvi18g735 211 SUPERFAMILY Homeodomain-like 72 142 IPR009057 -
Vvi18g735 211 SMART HOX_1 74 141 IPR001356 GO:0003677
Vvi18g735 211 ProSiteProfiles 'Homeobox' domain profile. 72 137 IPR001356 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14354 PF00046 Homeodomain 2.20E-19 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g735 - - vvi:100250666 431.024