Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g735 | ATGGGAAGCATGAAGGTGCATCAGTTCGCACGTGGATTCTGGGAGCACGAACCCTCCCTCACGCTTGGCTGCAAGCGTTTACGCCCTCTTGCTCCCAAGCTGGCCAACAGTGACAGTGTCGCTGCTTTCGATCTCAAGAGCTTCATTAGACCTGAAAGTGGCCCCAGGAAGCTTGGATGCTCTGATGATAAGAGAGATTCACCTCAGGTGGAAACACATCCAGGTGGGACGCGGTGGAATCCAACCCAGGAACAGATTGGGATCTTGGAGATGCTGTATAAAAGTGGAATGCGCACTCCCAATGCACAGCAAATAGAACAAATCACTGCACAGCTTGGAAAGTACGGGAAGATCGAAGGCAAGAATGTGTTTTATTGGTTCCAAAACCACAAAGCACGGGAGAGACAGAAGCAGAAGCGCAACAGTTTGGGTCTCGGCCACTGTCCCAGGACTCCCACATCCATAACTACAATAACCTTGGATACCAGGGTGGAAGTGGGAAGAGAAGAAGATAGTCCAAACAAGAGAAAGTGTAAGAGCTGGACGTTTGAAACGGTGGAAGAAAATAACAGATACTACAGAGAGGAGGGAGATAAGACTCTGGAGCTTTTCCCGTTGCACCCGGAAGGCAGATGA | 636 | 49.84 | MGSMKVHQFARGFWEHEPSLTLGCKRLRPLAPKLANSDSVAAFDLKSFIRPESGPRKLGCSDDKRDSPQVETHPGGTRWNPTQEQIGILEMLYKSGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLGHCPRTPTSITTITLDTRVEVGREEDSPNKRKCKSWTFETVEENNRYYREEGDKTLELFPLHPEGR* | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 8514130 | 8515605 | + | Vvi18g735 | Vvi18g735 | 780438 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g735 | 211 | MobiDBLite | consensus disorder prediction | 56 | 71 | - | - | |
Vvi18g735 | 211 | MobiDBLite | consensus disorder prediction | 54 | 80 | - | - | |
Vvi18g735 | 211 | Gene3D | - | 77 | 142 | - | - | |
Vvi18g735 | 211 | Pfam | Homeodomain | 77 | 136 | IPR001356 | GO:0003677 | |
Vvi18g735 | 211 | PANTHER | WUSCHEL-RELATED HOMEOBOX 4 | 4 | 211 | IPR044186 | GO:0003700|GO:0010067|GO:0010087|GO:0051301 | |
Vvi18g735 | 211 | CDD | homeodomain | 77 | 138 | IPR001356 | GO:0003677 | |
Vvi18g735 | 211 | SUPERFAMILY | Homeodomain-like | 72 | 142 | IPR009057 | - | |
Vvi18g735 | 211 | SMART | HOX_1 | 74 | 141 | IPR001356 | GO:0003677 | |
Vvi18g735 | 211 | ProSiteProfiles | 'Homeobox' domain profile. | 72 | 137 | IPR001356 | GO:0003677 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14354 | PF00046 | Homeodomain | 2.20E-19 | CL0123 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g735 | - | - | vvi:100250666 | 431.024 |