Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g735 ATGGGAAGCATGAAGGTGCATCAGTTCGCACGTGGATTCTGGGAGCACGAACCCTCCCTCACGCTTGGCTGCAAGCGTTTACGCCCTCTTGCTCCCAAGCTGGCCAACAGTGACAGTGTCGCTGCTTTCGATCTCAAGAGCTTCATTAGACCTGAAAGTGGCCCCAGGAAGCTTGGATGCTCTGATGATAAGAGAGATTCACCTCAGGTGGAAACACATCCAGGTGGGACGCGGTGGAATCCAACCCAGGAACAGATTGGGATCTTGGAGATGCTGTATAAAAGTGGAATGCGCACTCCCAATGCACAGCAAATAGAACAAATCACTGCACAGCTTGGAAAGTACGGGAAGATCGAAGGCAAGAATGTGTTTTATTGGTTCCAAAACCACAAAGCACGGGAGAGACAGAAGCAGAAGCGCAACAGTTTGGGTCTCGGCCACTGTCCCAGGACTCCCACATCCATAACTACAATAACCTTGGATACCAGGGTGGAAGTGGGAAGAGAAGAAGATAGTCCAAACAAGAGAAAGTGTAAGAGCTGGACGTTTGAAACGGTGGAAGAAAATAACAGATACTACAGAGAGGAGGGAGATAAGACTCTGGAGCTTTTCCCGTTGCACCCGGAAGGCAGATGA 636 49.84 MGSMKVHQFARGFWEHEPSLTLGCKRLRPLAPKLANSDSVAAFDLKSFIRPESGPRKLGCSDDKRDSPQVETHPGGTRWNPTQEQIGILEMLYKSGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLGHCPRTPTSITTITLDTRVEVGREEDSPNKRKCKSWTFETVEENNRYYREEGDKTLELFPLHPEGR* 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8514130 8515605 + Vvi18g735 Vvi18g735 780438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g735 211 MobiDBLite consensus disorder prediction 56 71 - -
Vvi18g735 211 MobiDBLite consensus disorder prediction 54 80 - -
Vvi18g735 211 Gene3D - 77 142 - -
Vvi18g735 211 Pfam Homeodomain 77 136 IPR001356 GO:0003677
Vvi18g735 211 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 211 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Vvi18g735 211 CDD homeodomain 77 138 IPR001356 GO:0003677
Vvi18g735 211 SUPERFAMILY Homeodomain-like 72 142 IPR009057 -
Vvi18g735 211 SMART HOX_1 74 141 IPR001356 GO:0003677
Vvi18g735 211 ProSiteProfiles 'Homeobox' domain profile. 72 137 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g735 - - - vvi:100250666 431.024
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g735 . . . . . . . . Cmo05g00169 Cmo12g00505 . . . Car12g00518 Sed11g0934 . Cpe07g00494 Bhi04g00375 Tan02g1791 Cmetu12g0458 . Hepe08g1298 . Lcy13g2095 Cla08g01585 Cam08g2084 Cec08g1665 Cco08g1796 Clacu08g1770 . Cre08g1554 . . Cone17ag0854 Cone20ag0200 . . . Cme03g02065 . . . . . Bpe05g00030 Bma01g00657 Bma05g00042 . . . Cma12g00562 Cma05g00171 Car05g00145 . Cpe11g00141 . . . . . . . . . . . . . . . Lsi08g01489 Csa02g01931 Chy03g01558 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi8g89 . 14 232 Wox Gene Family AT3G03660 55.9 8.3e-58 221.1
Vvi8g89 . 14 232 Wox Gene Family AT5G17810 51.0 3.5e-55 212.2
Vvi4g1199 ECH 1 240 Wox Gene Family AT4G35550 56.4 6.1e-68 254.6
Vvi18g82 ECH 1 244 Wox Gene Family AT4G35550 54.3 1.4e-67 253.4
Vvi4g1200 . 1 237 Wox Gene Family AT4G35550 55.9 6.8e-67 251.1
Vvi18g735 . 4 143 Wox Gene Family AT1G46480 69.0 1.5e-52 203.0
Vvi13g442 ECH 19 174 Wox Gene Family AT3G11260 57.4 4.6e-43 171.4
Vvi18g735 . 4 143 Wox Gene Family AT1G46480 69.0 1.5e-52 203.0
Vvi13g442 ECH 19 174 Wox Gene Family AT3G11260 57.4 4.6e-43 171.4
Vvi8g89 . 14 232 Wox Gene Family AT3G03660 55.9 8.3e-58 221.1
Vvi8g89 . 14 232 Wox Gene Family AT5G17810 51.0 3.5e-55 212.2
Vvi4g1199 ECH 1 240 Wox Gene Family AT4G35550 56.4 6.1e-68 254.6
Vvi18g82 ECH 1 244 Wox Gene Family AT4G35550 54.3 1.4e-67 253.4
Vvi4g1200 . 1 237 Wox Gene Family AT4G35550 55.9 6.8e-67 251.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14354 PF00046 Homeodomain 2.20E-19 CL0123 Vvi TF