Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g736 | ATGGCGCAGATTCAGGCCGCAGTAGCAGGTCCCAATGGAGTGGCGAATACAGCATCGCTATATGTGGGAGACCTTGACGTCAACATCACGGATTCGCAGCTTTACGATCTGTTTATCCAGGCCGGCCAAGTGCTGTCCGTACGGGTGTGTAGAGACTTGAGCACCCGGAGATCTCTCGGCTACGGCTACGTCAACTATAGCAACCCTCAAGATGCGGCAAGGGCATTGGATCTACTGAACTTCACTCCACTCAATGGCAAGCCCATCAGAATTATGTACTCTCATCGGGACCCTAGTATTCGTAAAAGTGGAACTGCCAATATATTTATTAAGAATCTGGACAAGTCAATCGACAACAAAGCACTCCATGATACTTTTTCTGCTTTCGGAAACATTCTTTCTTGCAAGATAGCTACTGATCCTTCTGGCCAGTCCAAAGGCTATGGTTTTGTACAATTTGATAATGAAGAATCTGCGCAAAATGCTATAGATAAGTTGAATGGCATGCTGATTAATGACAAACAAGTGTATGTTGGACAATTTCTTCGGAAGCAGGAGAGAGAAACTGCTTTGAATAAGACAAAATTTAATAATGTTTATGTGAAAAATCTCTCAGAATCAACAACAGAAGAAGATCTGAAGAATATTTTTGGAGAATTTGGAATAATTACTAGTGTTGTTGTAATGAGGGATGGAGATGGAAAATCAAAATGTTTTGGATTTGTTAACTTTGAGAATGCAGATGATGCTGCTGAAGCAGTTGAGGCTCTTAATGGGAAGAAATTTGATGAGAAAGAATGGTATGTTGGGAAAGCCCAGAAAAAATATGAAAGAGAGCTTGAACTGAAAGGGCGATTTGAGCAGAGTATGAAGGAAGTAGTAGACAAATTTCAAGGGGTGAACTTGTATATTAAAAACTTGGACGATAGCATTGGCGATGATAAACTAAAGGAATTGTTCTCAGAGTTTGGTACAATTACCTCATGCAAGGTTATGCGTGACCCAAGTGGAATAAGTAGAGGCTCGGGATTTGTTGCCTTCTCAACTTCTGAAGAAGCATCTCGAGCACTCACGGAGATGAATGGTAAAATGGTTGTGAGCAAACCTCTTTATGTTGCCCTTGCACAGAGGAAAGAAGAGAGGAGAGCCAGGTTGCAGGCACAGTTCTCTCAAATGAGGCCCGTCTCGATGGCACCTTCAGTTGCACCTCGGATGCCAATGTACCCTCCTGGTGCTCCCGGTCTTGGGCAGCAATTATTTTATGGGCAAGGGCCACCTGCTATAATTCCTCCCCAAGCTGGATTCGGTTACCAGCAGCAACTCGTTCCTGGAATGAGGCCTGGTGGTGCTCCCATGCCAAATTTCTTTGTTCCACTGGTCCAGCAAGGTCAGCAGGGTCAACGCCCAGGGGGCAGACGTGGGGCAGGTCCTGTGCAGCAGAATCAGCAGCCAGTGCCCCTGATGCAGCAGCAGATGCTTCCAAGGGGGGGACGAGTCTACCGCTACCCTCCTGGCCGCAATATGCCTGATGTTCCAATGCCAGATGCTGCAATTGGTCAGCCAATGCCCATTTCAGCTTTGGCTTCAGCTCTTGCAAATGCAACACCTGATCAGCAAAGAACAATGCTGGGTGAAAGTTTGTACCCTCTCGTGGATCAGCTGGAGCATGAGATGGCAGCTAAAGTGACAGGCATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATCTGCTCGAGTCGCCAGAGGCTTTGAAGTCCAAGGTTGCGGAGGCCATGGACGTCCTGAGGAATGTTGCTCAGCAGCAGGCTAACAGCCCAACCGAACAACTAGCCTCACTGTCCCTAAATGACAGCCTTGTTCCCTGA | 1866 | 46.73 | MAQIQAAVAGPNGVANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVSMAPSVAPRMPMYPPGAPGLGQQLFYGQGPPAIIPPQAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQRPGGRRGAGPVQQNQQPVPLMQQQMLPRGGRVYRYPPGRNMPDVPMPDAAIGQPMPISALASALANATPDQQRTMLGESLYPLVDQLEHEMAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQANSPTEQLASLSLNDSLVP* | 622 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 8518634 | 8531571 | + | Vvi18g736 | Vvi18g736 | 780439 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g736 | 621 | SMART | rrm2_1 | 301 | 373 | IPR003954 | GO:0003676 | |
Vvi18g736 | 621 | SMART | rrm2_1 | 198 | 270 | IPR003954 | GO:0003676 | |
Vvi18g736 | 621 | SMART | rrm2_1 | 107 | 179 | IPR003954 | GO:0003676 | |
Vvi18g736 | 621 | SMART | rrm2_1 | 19 | 92 | IPR003954 | GO:0003676 | |
Vvi18g736 | 621 | Pfam | Poly-adenylate binding protein, unique domain | 531 | 595 | IPR002004 | GO:0003723 | |
Vvi18g736 | 621 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 16 | 605 | - | - | |
Vvi18g736 | 621 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 18 | 596 | IPR006515 | GO:0003723 | |
Vvi18g736 | 621 | SUPERFAMILY | PABC (PABP) domain | 479 | 614 | IPR036053 | GO:0003723 | |
Vvi18g736 | 621 | MobiDBLite | consensus disorder prediction | 600 | 621 | - | - | |
Vvi18g736 | 621 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 18 | 96 | IPR000504 | GO:0003723 | |
Vvi18g736 | 621 | Gene3D | - | 297 | 399 | IPR012677 | - | |
Vvi18g736 | 621 | PANTHER | RNA BINDING PROTEIN | 16 | 605 | - | - | |
Vvi18g736 | 621 | SMART | rrm1_1 | 107 | 179 | IPR000504 | GO:0003723 | |
Vvi18g736 | 621 | SMART | rrm1_1 | 301 | 373 | IPR000504 | GO:0003723 | |
Vvi18g736 | 621 | SMART | rrm1_1 | 19 | 92 | IPR000504 | GO:0003723 | |
Vvi18g736 | 621 | SMART | rrm1_1 | 198 | 270 | IPR000504 | GO:0003723 | |
Vvi18g736 | 621 | SUPERFAMILY | RNA-binding domain, RBD | 18 | 187 | IPR035979 | GO:0003676 | |
Vvi18g736 | 621 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 300 | 377 | IPR000504 | GO:0003723 | |
Vvi18g736 | 621 | SMART | poly_2 | 535 | 598 | IPR002004 | GO:0003723 | |
Vvi18g736 | 621 | CDD | RRM4_I_PABPs | 299 | 377 | - | - | |
Vvi18g736 | 621 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 302 | 370 | IPR000504 | GO:0003723 | |
Vvi18g736 | 621 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 199 | 267 | IPR000504 | GO:0003723 | |
Vvi18g736 | 621 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 20 | 90 | IPR000504 | GO:0003723 | |
Vvi18g736 | 621 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 108 | 176 | IPR000504 | GO:0003723 | |
Vvi18g736 | 621 | Gene3D | - | 519 | 602 | - | - | |
Vvi18g736 | 621 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 106 | 178 | IPR000504 | GO:0003723 | |
Vvi18g736 | 621 | CDD | RRM1_I_PABPs | 19 | 98 | - | - | |
Vvi18g736 | 621 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 523 | 600 | IPR002004 | GO:0003723 | |
Vvi18g736 | 621 | CDD | RRM2_I_PABPs | 104 | 179 | IPR045305 | - | |
Vvi18g736 | 621 | CDD | RRM3_I_PABPs | 196 | 275 | - | - | |
Vvi18g736 | 621 | Gene3D | - | 3 | 99 | IPR012677 | - | |
Vvi18g736 | 621 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 197 | 274 | IPR000504 | GO:0003723 | |
Vvi18g736 | 621 | Gene3D | - | 100 | 191 | IPR012677 | - | |
Vvi18g736 | 621 | Gene3D | - | 192 | 296 | IPR012677 | - | |
Vvi18g736 | 621 | SUPERFAMILY | RNA-binding domain, RBD | 197 | 381 | IPR035979 | GO:0003676 |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g736 | K13126 | - | vvi:100255846 | 1171.38 |