Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g736 ATGGCGCAGATTCAGGCCGCAGTAGCAGGTCCCAATGGAGTGGCGAATACAGCATCGCTATATGTGGGAGACCTTGACGTCAACATCACGGATTCGCAGCTTTACGATCTGTTTATCCAGGCCGGCCAAGTGCTGTCCGTACGGGTGTGTAGAGACTTGAGCACCCGGAGATCTCTCGGCTACGGCTACGTCAACTATAGCAACCCTCAAGATGCGGCAAGGGCATTGGATCTACTGAACTTCACTCCACTCAATGGCAAGCCCATCAGAATTATGTACTCTCATCGGGACCCTAGTATTCGTAAAAGTGGAACTGCCAATATATTTATTAAGAATCTGGACAAGTCAATCGACAACAAAGCACTCCATGATACTTTTTCTGCTTTCGGAAACATTCTTTCTTGCAAGATAGCTACTGATCCTTCTGGCCAGTCCAAAGGCTATGGTTTTGTACAATTTGATAATGAAGAATCTGCGCAAAATGCTATAGATAAGTTGAATGGCATGCTGATTAATGACAAACAAGTGTATGTTGGACAATTTCTTCGGAAGCAGGAGAGAGAAACTGCTTTGAATAAGACAAAATTTAATAATGTTTATGTGAAAAATCTCTCAGAATCAACAACAGAAGAAGATCTGAAGAATATTTTTGGAGAATTTGGAATAATTACTAGTGTTGTTGTAATGAGGGATGGAGATGGAAAATCAAAATGTTTTGGATTTGTTAACTTTGAGAATGCAGATGATGCTGCTGAAGCAGTTGAGGCTCTTAATGGGAAGAAATTTGATGAGAAAGAATGGTATGTTGGGAAAGCCCAGAAAAAATATGAAAGAGAGCTTGAACTGAAAGGGCGATTTGAGCAGAGTATGAAGGAAGTAGTAGACAAATTTCAAGGGGTGAACTTGTATATTAAAAACTTGGACGATAGCATTGGCGATGATAAACTAAAGGAATTGTTCTCAGAGTTTGGTACAATTACCTCATGCAAGGTTATGCGTGACCCAAGTGGAATAAGTAGAGGCTCGGGATTTGTTGCCTTCTCAACTTCTGAAGAAGCATCTCGAGCACTCACGGAGATGAATGGTAAAATGGTTGTGAGCAAACCTCTTTATGTTGCCCTTGCACAGAGGAAAGAAGAGAGGAGAGCCAGGTTGCAGGCACAGTTCTCTCAAATGAGGCCCGTCTCGATGGCACCTTCAGTTGCACCTCGGATGCCAATGTACCCTCCTGGTGCTCCCGGTCTTGGGCAGCAATTATTTTATGGGCAAGGGCCACCTGCTATAATTCCTCCCCAAGCTGGATTCGGTTACCAGCAGCAACTCGTTCCTGGAATGAGGCCTGGTGGTGCTCCCATGCCAAATTTCTTTGTTCCACTGGTCCAGCAAGGTCAGCAGGGTCAACGCCCAGGGGGCAGACGTGGGGCAGGTCCTGTGCAGCAGAATCAGCAGCCAGTGCCCCTGATGCAGCAGCAGATGCTTCCAAGGGGGGGACGAGTCTACCGCTACCCTCCTGGCCGCAATATGCCTGATGTTCCAATGCCAGATGCTGCAATTGGTCAGCCAATGCCCATTTCAGCTTTGGCTTCAGCTCTTGCAAATGCAACACCTGATCAGCAAAGAACAATGCTGGGTGAAAGTTTGTACCCTCTCGTGGATCAGCTGGAGCATGAGATGGCAGCTAAAGTGACAGGCATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATCTGCTCGAGTCGCCAGAGGCTTTGAAGTCCAAGGTTGCGGAGGCCATGGACGTCCTGAGGAATGTTGCTCAGCAGCAGGCTAACAGCCCAACCGAACAACTAGCCTCACTGTCCCTAAATGACAGCCTTGTTCCCTGA 1866 46.73 MAQIQAAVAGPNGVANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVSMAPSVAPRMPMYPPGAPGLGQQLFYGQGPPAIIPPQAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQRPGGRRGAGPVQQNQQPVPLMQQQMLPRGGRVYRYPPGRNMPDVPMPDAAIGQPMPISALASALANATPDQQRTMLGESLYPLVDQLEHEMAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQANSPTEQLASLSLNDSLVP* 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8518634 8531571 + Vvi18g736 Vvi18g736 780439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g736 621 SMART rrm2_1 301 373 IPR003954 GO:0003676
Vvi18g736 621 SMART rrm2_1 198 270 IPR003954 GO:0003676
Vvi18g736 621 SMART rrm2_1 107 179 IPR003954 GO:0003676
Vvi18g736 621 SMART rrm2_1 19 92 IPR003954 GO:0003676
Vvi18g736 621 Pfam Poly-adenylate binding protein, unique domain 531 595 IPR002004 GO:0003723
Vvi18g736 621 PANTHER POLYADENYLATE-BINDING PROTEIN 16 605 - -
Vvi18g736 621 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 18 596 IPR006515 GO:0003723
Vvi18g736 621 SUPERFAMILY PABC (PABP) domain 479 614 IPR036053 GO:0003723
Vvi18g736 621 MobiDBLite consensus disorder prediction 600 621 - -
Vvi18g736 621 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Vvi18g736 621 Gene3D - 297 399 IPR012677 -
Vvi18g736 621 PANTHER RNA BINDING PROTEIN 16 605 - -
Vvi18g736 621 SMART rrm1_1 107 179 IPR000504 GO:0003723
Vvi18g736 621 SMART rrm1_1 301 373 IPR000504 GO:0003723
Vvi18g736 621 SMART rrm1_1 19 92 IPR000504 GO:0003723
Vvi18g736 621 SMART rrm1_1 198 270 IPR000504 GO:0003723
Vvi18g736 621 SUPERFAMILY RNA-binding domain, RBD 18 187 IPR035979 GO:0003676
Vvi18g736 621 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 377 IPR000504 GO:0003723
Vvi18g736 621 SMART poly_2 535 598 IPR002004 GO:0003723
Vvi18g736 621 CDD RRM4_I_PABPs 299 377 - -
Vvi18g736 621 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 370 IPR000504 GO:0003723
Vvi18g736 621 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 267 IPR000504 GO:0003723
Vvi18g736 621 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 90 IPR000504 GO:0003723
Vvi18g736 621 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 176 IPR000504 GO:0003723
Vvi18g736 621 Gene3D - 519 602 - -
Vvi18g736 621 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 178 IPR000504 GO:0003723
Vvi18g736 621 CDD RRM1_I_PABPs 19 98 - -
Vvi18g736 621 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 523 600 IPR002004 GO:0003723
Vvi18g736 621 CDD RRM2_I_PABPs 104 179 IPR045305 -
Vvi18g736 621 CDD RRM3_I_PABPs 196 275 - -
Vvi18g736 621 Gene3D - 3 99 IPR012677 -
Vvi18g736 621 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 274 IPR000504 GO:0003723
Vvi18g736 621 Gene3D - 100 191 IPR012677 -
Vvi18g736 621 Gene3D - 192 296 IPR012677 -
Vvi18g736 621 SUPERFAMILY RNA-binding domain, RBD 197 381 IPR035979 GO:0003676
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1031 Vvi18g736 ECH
Vvi3g384 Vvi18g736 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g736 K13126 - vvi:100255846 1171.38