Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g738 ATGTTTTCCAGCATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATCTGCTCGAGTCGCCAGAGGCTTTGAAGTCCAAGGTTGCGGAGGCCATGGACGTCCTGAGGAATGTTGCTCAGCAGCAGGCTAACAGCCCAACCGAACAACTAGCCTCACTGTCCCTAAATGACAGCCTTGTTCCCTGA 186 53.23 MFSSMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQANSPTEQLASLSLNDSLVP* 62
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8544585 8547554 + Vvi18g738 Vvi18g738 780441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g738 61 SUPERFAMILY PABC (PABP) domain 5 54 IPR036053 GO:0003723
Vvi18g738 61 Gene3D - 3 54 - -
Vvi18g738 61 MobiDBLite consensus disorder prediction 40 61 - -
Vvi18g738 61 Pfam Poly-adenylate binding protein, unique domain 5 35 IPR002004 GO:0003723
Vvi18g738 61 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1 40 IPR002004 GO:0003723
Vvi18g738 61 PANTHER POLYADENYLATE-BINDING PROTEIN 4 47 - -
Vvi18g738 61 PANTHER RNA BINDING PROTEIN 4 47 - -
Vvi18g738 61 SMART poly_2 2 38 IPR002004 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g738 K13126 PABPC; polyadenylate-binding protein - vvi:109121673 109.768
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g738 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031728 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2