Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g743 | ATGGAAAGACATGGTGATGGTGTTCTCGGAATTCCCTATTCATTGCGTACCTTGGCTGCTGCCAGTGAAGGAAGAAGCAGGCTAGTATCTGAGATTCGCAATGTCTTGGATCTCATGCGTAGGGGTGAGGACTTGCGATTTGAGGATGTCATGATCCTGGACCAGTCAGTATTTTTTGGGGTGGCTGATATTCATGATCGTCATAGGGATATGCGACTTGATGTGGATAATATGTCTTATGAGGAGCTATTGGCTCTGGAAGAGCGCATCGGAGATGTGTGCACTGGATTGAGCGAAGAAACTATATTGAAGCAGCTGAAACAGCGAAAATATTGGTCAGTGGCCAGAGGAGCTGAGGTCGAAGTGGAACCCTGCTGTATTTGTCAGGAGGAATATGGAGATGGAGAAGATATTGGGACTCTGGAATGTGGTCATGATTTCCATTATGGCTGTATTAAACAGTGGCTGATGCACAAGAACTTGTGCCCCATTTGTAAAACAACTGCCCTGGGTATATGA | 519 | 45.86 | MERHGDGVLGIPYSLRTLAAASEGRSRLVSEIRNVLDLMRRGEDLRFEDVMILDQSVFFGVADIHDRHRDMRLDVDNMSYEELLALEERIGDVCTGLSEETILKQLKQRKYWSVARGAEVEVEPCCICQEEYGDGEDIGTLECGHDFHYGCIKQWLMHKNLCPICKTTALGI* | 173 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 8600988 | 8605039 | + | Vvi18g743 | Vvi18g743 | 780446 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g743 | 172 | SUPERFAMILY | RING/U-box | 124 | 168 | - | - | |
Vvi18g743 | 172 | CDD | RING-H2_TTC3 | 124 | 166 | - | - | |
Vvi18g743 | 172 | Pfam | Ring finger domain | 125 | 166 | IPR001841 | - | |
Vvi18g743 | 172 | ProSiteProfiles | Zinc finger RING-type profile. | 125 | 166 | IPR001841 | - | |
Vvi18g743 | 172 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF165 | 2 | 170 | IPR045191 | GO:0061630 | |
Vvi18g743 | 172 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 170 | IPR013083 | - | |
Vvi18g743 | 172 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE | 2 | 170 | - | - | |
Vvi18g743 | 172 | SMART | ring_2 | 125 | 165 | IPR001841 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Vvi7g1049 | Vvi18g743 | ECH | |
Vvi3g391 | Vvi18g743 | ECH | |
Vvi7g1054 | Vvi18g743 | ECH |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g743 | - | - | vvi:100267740 | 357.836 |