Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g743 ATGGAAAGACATGGTGATGGTGTTCTCGGAATTCCCTATTCATTGCGTACCTTGGCTGCTGCCAGTGAAGGAAGAAGCAGGCTAGTATCTGAGATTCGCAATGTCTTGGATCTCATGCGTAGGGGTGAGGACTTGCGATTTGAGGATGTCATGATCCTGGACCAGTCAGTATTTTTTGGGGTGGCTGATATTCATGATCGTCATAGGGATATGCGACTTGATGTGGATAATATGTCTTATGAGGAGCTATTGGCTCTGGAAGAGCGCATCGGAGATGTGTGCACTGGATTGAGCGAAGAAACTATATTGAAGCAGCTGAAACAGCGAAAATATTGGTCAGTGGCCAGAGGAGCTGAGGTCGAAGTGGAACCCTGCTGTATTTGTCAGGAGGAATATGGAGATGGAGAAGATATTGGGACTCTGGAATGTGGTCATGATTTCCATTATGGCTGTATTAAACAGTGGCTGATGCACAAGAACTTGTGCCCCATTTGTAAAACAACTGCCCTGGGTATATGA 519 45.86 MERHGDGVLGIPYSLRTLAAASEGRSRLVSEIRNVLDLMRRGEDLRFEDVMILDQSVFFGVADIHDRHRDMRLDVDNMSYEELLALEERIGDVCTGLSEETILKQLKQRKYWSVARGAEVEVEPCCICQEEYGDGEDIGTLECGHDFHYGCIKQWLMHKNLCPICKTTALGI* 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8600988 8605039 + Vvi18g743 Vvi18g743 780446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g743 172 SUPERFAMILY RING/U-box 124 168 - -
Vvi18g743 172 CDD RING-H2_TTC3 124 166 - -
Vvi18g743 172 Pfam Ring finger domain 125 166 IPR001841 -
Vvi18g743 172 ProSiteProfiles Zinc finger RING-type profile. 125 166 IPR001841 -
Vvi18g743 172 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 170 IPR045191 GO:0061630
Vvi18g743 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 170 IPR013083 -
Vvi18g743 172 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE 2 170 - -
Vvi18g743 172 SMART ring_2 125 165 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1049 Vvi18g743 ECH
Vvi3g391 Vvi18g743 ECH
Vvi7g1054 Vvi18g743 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g743 - - vvi:100267740 357.836