Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g744 ATGGCGGATCTGTATGGAACAAACGTTTCTTCTTCTGCCACCGCTCTCGCTCTCGAATCAGAAGATATCTCTGCGTTTCTTCACCACTTCCTCCATAATCAGTCTTCTTCTTCTACTACTACTAGTACTATTAAGGCTAAGCACGCGCACTCCTTTTCGCCTGCGCTACTACATCCGGAGACGGCATCCGCCGCCGAAGTGTTGTCTCCACAGAAGGATCGGCGCCGGTTCTCTCGATCGGCGATTCTTTCCGACTCCGACTGCCGAGTTAGGAGCGGACTCTCTACGGCTGGATCATCTGCCGTGGTTGAATCCTCCACCGGCATTAACTTCTCAGATCACGGGGCCTATTGCCCTGCGGGTATGAAGGAGACTGCTGGGAACACTTTCAGTTCTATTGCTGCTGTGGATTCTGAGGCGATCACGGTTTCCAGGAAGAGAAGAATGTTTTCCATGGAGAATAGCGTGGACGACTTTGGTTGTGATAGCGAGAAGGGTCCTGAAGCATCGGATGTGCCCTCGAATCCAGCCCCGTCTCGGTCTTCTTCAAAGAGGAGCAGAGCAGCTGAGGTCCATAATTTGTCAGAAAAGAGAAGGAGGAGCAGGATAAATGAAAAAATGAAAGCCTTGCAGAATTTAATTCCTAATTCTAATAAGACGGATAAGGCTTCAATGTTGGATGAAGCCATCGAATACCTGAAGCAGCTTCAGCTCCAAGTTCAGATGCTAACAATGAGAAATGGATTAAGTTTACATCCAATCTACTTACCAGGAGCACTGCAGCCTACGCAGCTGCCCCAAACGGGAGCAGGTTTTGCTGAGGGAAATCTATTGCTTAGCAACAGTGGAACTGGCACACTTCCTGCTAATCAAGAAATCTCAATGCAAACTACATTTGATCTTACCAGCCAACCAATTGCCATACCCACGATGACAAACATGAACAATTCAGATACCTCGTTTGGTTTTGAACATTCGGATCAGCCTCATTATGGACCCTTCAATCTCACAGGATCATCCAAGGAAATCTGCCACGAAGAGGCATTACCAGAACCTCAAGGAGAGATGAACTGCTCCAGGAAAAACTCATCATCTGGTGTGTCTTCCTAA 1110 47.75 MADLYGTNVSSSATALALESEDISAFLHHFLHNQSSSSTTTSTIKAKHAHSFSPALLHPETASAAEVLSPQKDRRRFSRSAILSDSDCRVRSGLSTAGSSAVVESSTGINFSDHGAYCPAGMKETAGNTFSSIAAVDSEAITVSRKRRMFSMENSVDDFGCDSEKGPEASDVPSNPAPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTMRNGLSLHPIYLPGALQPTQLPQTGAGFAEGNLLLSNSGTGTLPANQEISMQTTFDLTSQPIAIPTMTNMNNSDTSFGFEHSDQPHYGPFNLTGSSKEICHEEALPEPQGEMNCSRKNSSSGVSS* 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8609030 8612826 + Vvi18g744 Vvi18g744 780447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g744 369 SMART finulus 193 242 IPR011598 GO:0046983
Vvi18g744 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 247 IPR036638 GO:0046983
Vvi18g744 369 Pfam Helix-loop-helix DNA-binding domain 191 237 IPR011598 GO:0046983
Vvi18g744 369 Gene3D - 182 246 IPR036638 GO:0046983
Vvi18g744 369 Coils Coil 226 246 - -
Vvi18g744 369 MobiDBLite consensus disorder prediction 157 202 - -
Vvi18g744 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
Vvi18g744 369 PANTHER TRANSCRIPTION FACTOR SPATULA-LIKE ISOFORM X1 155 368 - -
Vvi18g744 369 PANTHER TRANSCRIPTION FACTOR SPATULA-LIKE ISOFORM X1 1 139 - -
Vvi18g744 369 MobiDBLite consensus disorder prediction 185 202 - -
Vvi18g744 369 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 139 IPR031066 -
Vvi18g744 369 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 155 368 IPR031066 -
Vvi18g744 369 MobiDBLite consensus disorder prediction 345 369 - -
Vvi18g744 369 CDD bHLH_AtPIF_like 188 249 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1055 Vvi18g744 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14355 PF00010 HLH 4.20E-14 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g744 - - vvi:100245419 680.248