Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g745 ATGTCTGAAGAAGCAAGCCATGGAAATCTGTGGCAAAACCATTCTTGTGATTTCTTGAATTCAGATAGTAATTCAGGTGGTAGTGGTGGAGAAAAGTTGGGGGAAAAGCCACCTGATTCAAGCTCTAATAGCCCCGTTGAGAACCGACAGGGTATGGCACTGGTGGGTCGGAAGCGAGGCAGGCGTGCAAAGGCTAGTGACGGTGGTGGTGGTGAATCAGAGCATGAGACTCACATATGGACGGAGAGAGAAAGGAGGAAGAAGATGAGGAACATGTTCTCTAGTCTTCATGCTTTGCTTCCTCAATTGCCTCCTAAGGCAGACAAGTCCACCATAGTTGACGAAGCAGTGAACTATATCAAGACCCTTCAAAACTCTCTTACAAAACTTCAAAAGCAAAGGCATGAAATGCAGCAGGGTGCAACTGCTGTTGACTGTGAACAATCCATCATCACATCCCAAGCGTTAGCTCCGGACACGAGAGAAACATCTTTGCCCGCAGGTGATAGATCATTGAAGAACTACTTCTCACTGCCCACAAACAAGCCAAACTTGCTTTCAGCACCTTCTTCTTCATTGTGCTTCCAAACATGGTTTTCTCCAAACGTTGTGGTGAGCATGTGTGGCAATGATGCGCATATCAGCGTGTGTTCATCAAGGAAACCCGGGTTGCTAGCCACCATCTTCTACATACTGGAGAAACATAAGCTGGATGTGCTGTCTGCCCACATTTCCTCCACTCAGCAGCGCAGCATTTACATGATCCATGCCCATGCTAGTGGAGTTTCAGATGATCAACTTCCAAAGGGATTGACAGTGGAGGAAATATTCAAGCTAGCTGTAGGAGAGATGACCCTTTGGCTCTCATCATGTTAA 876 46.69 MSEEASHGNLWQNHSCDFLNSDSNSGGSGGEKLGEKPPDSSSNSPVENRQGMALVGRKRGRRAKASDGGGGESEHETHIWTERERRKKMRNMFSSLHALLPQLPPKADKSTIVDEAVNYIKTLQNSLTKLQKQRHEMQQGATAVDCEQSIITSQALAPDTRETSLPAGDRSLKNYFSLPTNKPNLLSAPSSSLCFQTWFSPNVVVSMCGNDAHISVCSSRKPGLLATIFYILEKHKLDVLSAHISSTQQRSIYMIHAHASGVSDDQLPKGLTVEEIFKLAVGEMTLWLSSC* 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8624952 8627945 + Vvi18g745 Vvi18g745 780448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g745 291 Coils Coil 113 140 - -
Vvi18g745 291 Gene3D - 70 140 IPR036638 GO:0046983
Vvi18g745 291 MobiDBLite consensus disorder prediction 1 79 - -
Vvi18g745 291 CDD bHLH_AtbHLH_like 78 131 IPR045239 -
Vvi18g745 291 Pfam Helix-loop-helix DNA-binding domain 76 124 IPR011598 GO:0046983
Vvi18g745 291 SMART finulus 81 129 IPR011598 GO:0046983
Vvi18g745 291 MobiDBLite consensus disorder prediction 1 28 - -
Vvi18g745 291 MobiDBLite consensus disorder prediction 60 79 - -
Vvi18g745 291 ProSiteProfiles ACT domain profile. 213 291 IPR002912 -
Vvi18g745 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 123 IPR011598 GO:0046983
Vvi18g745 291 PANTHER - 11 291 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vvi18g745 291 PANTHER TRANSCRIPTION FACTOR BHLH95-LIKE 11 291 - -
Vvi18g745 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 145 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g745 - - - vvi:100266006 565.459
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g392 Vvi18g745 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g745 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010769 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 3 1 0 2 1 1 1 1 1 1 1 1 2 1 2 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14356 PF00010 HLH 2.90E-11 No_clan Vvi TF