Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g746 ATGCCTGAGGGTGCGTTTTTGAACGATGAGCTCTCAAAACATACCTCAATTTTTGGTCTGCGCTTGTGGGTAGAAATCAGAATCGACCATTCCCGAAACCCAGCGAACCCCAACCCTGACCCCAAGACTCATCATCCTCCAAATGCGAACCCACTCCCTGAATCGGACCCCTTTGCCGGGGCGGAGCGACTGCTTCAGCCGGGAGAGGAGAGTCCCGTGACAATTGCTGTGCCTGAGGTTTCGCATTTGGGTTGGGGACATTGGTACACTCTGAGAGAGCTTGAACTTTCGACCAATGGGTTTGCTGATGAAAACGTGATAGGTGAAGGTGGGTATGGGATCGTTTACCGTGGTGTTTTGGAGGACAATACACAGGTGGCTGTCAAGAATTTGCTCAATAACAGGGGACAAGCTGAGAAGGAGTTTAAGGTTGAAGTTGAAGCAATTGGGCGTGTCAGGCATAAGAACTTGGTGAGGCTGCTTGGTTACTGTGCTGAAGGAGCCCATAGGATGCTAGTTTATGAGTATGTTGACAATGGGAACTTAGAACAGTGGCTTCATGGAGATGTGGGGCCTCACAGCCCTCTTACTTGGGACATCCGAATGAACATTATAATTGGAACAGCCAAAGGGTTGACTTATCTGCACGAGGGGCTTGAGCCTAAGGTCGTCCATCGTGATATTAAGTCGAGCAACATTTTGCTTGATAAGCAGTGGAATCCTAAAGTGTCTGACTTTGGCCTGGCGAAGCTCTTGGGCTCAGAGAGGAGTTATGTCACAACTCGTGTGATGGGAACATTTGGCTATGTAGCTCCAGAATACGCTAGTACTGGCATGTTGAATGAAAGAAGTGATGTATACAGTTTTGGTATTCTTCTTATGGAGATAATTTCTGGGAGAAACCCAGTTGATTATAGCCGGCCTCCGGGAGAGGTGAACCTTGTTGAGTGGCTTAAAGCAATGGTTACAAACCGGAATGCAGAGGGTGTTTTGGATCCCAAGATACCTGAGAAGCCATCTTCCAGGGCATTGAAGCGTGCCCTTTTAGTGGCTTTGCGCTGCGTGGACCCAAATGCCCAGAAGAGGCCAAAGATGGGGCATGTGATTCATATGCTTGAAGCTGATGATTTCCCCTTCCGAGATGATCGTAGAGCTGGAAGGGAACATGGGCGCGCACAGCGTGATGGAATGAAGGATAGGTTTCTGGAGAAACGGATGATTGAATCAGGTGACAGTAGTGGGTATGAAAGTGGTGCTCAAAACAATAGATCCTTGTGGAAAAAGCCAGAAGAACTCGTAGAAGAGCAGTAG 1311 48.36 MPEGAFLNDELSKHTSIFGLRLWVEIRIDHSRNPANPNPDPKTHHPPNANPLPESDPFAGAERLLQPGEESPVTIAVPEVSHLGWGHWYTLRELELSTNGFADENVIGEGGYGIVYRGVLEDNTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPHSPLTWDIRMNIIIGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILLMEIISGRNPVDYSRPPGEVNLVEWLKAMVTNRNAEGVLDPKIPEKPSSRALKRALLVALRCVDPNAQKRPKMGHVIHMLEADDFPFRDDRRAGREHGRAQRDGMKDRFLEKRMIESGDSSGYESGAQNNRSLWKKPEELVEEQ* 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8633938 8637255 + Vvi18g746 Vvi18g746 780449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g746 436 SUPERFAMILY Protein kinase-like (PK-like) 82 373 IPR011009 -
Vvi18g746 436 SMART serkin_6 101 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g746 436 MobiDBLite consensus disorder prediction 39 53 - -
Vvi18g746 436 MobiDBLite consensus disorder prediction 33 59 - -
Vvi18g746 436 PANTHER RECEPTOR-LIKE KINASE PLANT 72 424 - -
Vvi18g746 436 MobiDBLite consensus disorder prediction 382 436 - -
Vvi18g746 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Vvi18g746 436 PANTHER OS01G0323000 PROTEIN 72 424 - -
Vvi18g746 436 CDD STKc_IRAK 107 373 - -
Vvi18g746 436 Pfam Protein kinase domain 102 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g746 436 Gene3D Phosphorylase Kinase; domain 1 79 176 - -
Vvi18g746 436 MobiDBLite consensus disorder prediction 382 410 - -
Vvi18g746 436 Gene3D Transferase(Phosphotransferase) domain 1 177 383 - -
Vvi18g746 436 ProSitePatterns Protein kinases ATP-binding region signature. 107 129 IPR017441 GO:0005524
Vvi18g746 436 ProSiteProfiles Protein kinase domain profile. 101 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g587 Vvi18g746 ECH
Vvi7g1058 Vvi18g746 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76393 PF00069 Pkinase 8.70E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g746 - - vvi:100243696 837.795