Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g746 | ATGCCTGAGGGTGCGTTTTTGAACGATGAGCTCTCAAAACATACCTCAATTTTTGGTCTGCGCTTGTGGGTAGAAATCAGAATCGACCATTCCCGAAACCCAGCGAACCCCAACCCTGACCCCAAGACTCATCATCCTCCAAATGCGAACCCACTCCCTGAATCGGACCCCTTTGCCGGGGCGGAGCGACTGCTTCAGCCGGGAGAGGAGAGTCCCGTGACAATTGCTGTGCCTGAGGTTTCGCATTTGGGTTGGGGACATTGGTACACTCTGAGAGAGCTTGAACTTTCGACCAATGGGTTTGCTGATGAAAACGTGATAGGTGAAGGTGGGTATGGGATCGTTTACCGTGGTGTTTTGGAGGACAATACACAGGTGGCTGTCAAGAATTTGCTCAATAACAGGGGACAAGCTGAGAAGGAGTTTAAGGTTGAAGTTGAAGCAATTGGGCGTGTCAGGCATAAGAACTTGGTGAGGCTGCTTGGTTACTGTGCTGAAGGAGCCCATAGGATGCTAGTTTATGAGTATGTTGACAATGGGAACTTAGAACAGTGGCTTCATGGAGATGTGGGGCCTCACAGCCCTCTTACTTGGGACATCCGAATGAACATTATAATTGGAACAGCCAAAGGGTTGACTTATCTGCACGAGGGGCTTGAGCCTAAGGTCGTCCATCGTGATATTAAGTCGAGCAACATTTTGCTTGATAAGCAGTGGAATCCTAAAGTGTCTGACTTTGGCCTGGCGAAGCTCTTGGGCTCAGAGAGGAGTTATGTCACAACTCGTGTGATGGGAACATTTGGCTATGTAGCTCCAGAATACGCTAGTACTGGCATGTTGAATGAAAGAAGTGATGTATACAGTTTTGGTATTCTTCTTATGGAGATAATTTCTGGGAGAAACCCAGTTGATTATAGCCGGCCTCCGGGAGAGGTGAACCTTGTTGAGTGGCTTAAAGCAATGGTTACAAACCGGAATGCAGAGGGTGTTTTGGATCCCAAGATACCTGAGAAGCCATCTTCCAGGGCATTGAAGCGTGCCCTTTTAGTGGCTTTGCGCTGCGTGGACCCAAATGCCCAGAAGAGGCCAAAGATGGGGCATGTGATTCATATGCTTGAAGCTGATGATTTCCCCTTCCGAGATGATCGTAGAGCTGGAAGGGAACATGGGCGCGCACAGCGTGATGGAATGAAGGATAGGTTTCTGGAGAAACGGATGATTGAATCAGGTGACAGTAGTGGGTATGAAAGTGGTGCTCAAAACAATAGATCCTTGTGGAAAAAGCCAGAAGAACTCGTAGAAGAGCAGTAG | 1311 | 48.36 | MPEGAFLNDELSKHTSIFGLRLWVEIRIDHSRNPANPNPDPKTHHPPNANPLPESDPFAGAERLLQPGEESPVTIAVPEVSHLGWGHWYTLRELELSTNGFADENVIGEGGYGIVYRGVLEDNTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPHSPLTWDIRMNIIIGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILLMEIISGRNPVDYSRPPGEVNLVEWLKAMVTNRNAEGVLDPKIPEKPSSRALKRALLVALRCVDPNAQKRPKMGHVIHMLEADDFPFRDDRRAGREHGRAQRDGMKDRFLEKRMIESGDSSGYESGAQNNRSLWKKPEELVEEQ* | 437 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 8633938 | 8637255 | + | Vvi18g746 | Vvi18g746 | 780449 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g746 | 436 | SUPERFAMILY | Protein kinase-like (PK-like) | 82 | 373 | IPR011009 | - | |
Vvi18g746 | 436 | SMART | serkin_6 | 101 | 379 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi18g746 | 436 | MobiDBLite | consensus disorder prediction | 39 | 53 | - | - | |
Vvi18g746 | 436 | MobiDBLite | consensus disorder prediction | 33 | 59 | - | - | |
Vvi18g746 | 436 | PANTHER | RECEPTOR-LIKE KINASE PLANT | 72 | 424 | - | - | |
Vvi18g746 | 436 | MobiDBLite | consensus disorder prediction | 382 | 436 | - | - | |
Vvi18g746 | 436 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 223 | 235 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi18g746 | 436 | PANTHER | OS01G0323000 PROTEIN | 72 | 424 | - | - | |
Vvi18g746 | 436 | CDD | STKc_IRAK | 107 | 373 | - | - | |
Vvi18g746 | 436 | Pfam | Protein kinase domain | 102 | 370 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi18g746 | 436 | Gene3D | Phosphorylase Kinase; domain 1 | 79 | 176 | - | - | |
Vvi18g746 | 436 | MobiDBLite | consensus disorder prediction | 382 | 410 | - | - | |
Vvi18g746 | 436 | Gene3D | Transferase(Phosphotransferase) domain 1 | 177 | 383 | - | - | |
Vvi18g746 | 436 | ProSitePatterns | Protein kinases ATP-binding region signature. | 107 | 129 | IPR017441 | GO:0005524 | |
Vvi18g746 | 436 | ProSiteProfiles | Protein kinase domain profile. | 101 | 380 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76393 | PF00069 | Pkinase | 8.70E-48 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g746 | - | - | vvi:100243696 | 837.795 |