Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g747 ATGAGCAGGGTGCGGAGTTCCCGCAGTCTCTTTTCACATCATGCAGTACTGTCTTGGCTACTGCTCTTACTACTAGGGATCAACAATGCGATGTCAGAACTTGAAGAACGCCAGACATACATCATTCATATGGACCATTCCTACAAGCCTGATTCCTTCTCAACTCATGAATCATGGCACCTTTCTACTCTAAAATCAGTGTCAACATCTCCAGTCAACCACAAAGAAATGTTGCTCTACTCCTATAGTCATGTGATGCAAGGTTTCAGTGCCAGACTCACACCTTCTGAACTATCGCAATTGGAGAAGTCTCCAGCTCATCGTGCCACATATCGGGAGACGTTTGGAAAGCTCTTCACCACCCACACCACTAAGTTCCTTGGGCTAAAACCCAACTCTGGCATATGGCCTGCAGCATCATATGGTGACGGTGTGATCATTGGAATAATTGACACTGGAATTTGGCCAGAAAGCAGGAGCTTTAGCGACAAAGGGATGTCACCAGTGCCAGAGAGATGGAAGGGCCAGTGTGAGTATGGAACGGCATTTTCCCAATCTTGTTGCAACAGGAAGCTCGTTGGTGCTCGATCTTTTAGCAAAGGCCTCATAGCAGCAGGCCGAAATATCTCCACGGAGCTTGACTTTGACTCAGCACGAGACAATGTTGGTCATGGCACCCACACCTCATCCACGGCTGCAGGTAACTACGTACTTGGTGCAAGTCATTTTGGATATGCTAGGGGTAGCGCCAGAGGGGTGGCACCACGAGCGCATCTTGCCATGTACAAGGTCCTCTGGGCAACAGATACATATGAGAGTGCAGCTACTGATGTGCTTGCTGGCATGGACCAAGCAATAGTTGATGGGGTTGATATCATGTCATTGTCTCTTGGCTTTGACCAAACACCTTATTTCAGCGATGTCATCGCCATTGCTTCTCTTTCCGCAATTGAGCAAGGAATTTTTGTTGTCTGTGCTACTGGGAATGATGGTGGGACAAGTAGTACACACAACGGAGCACCTTGGATCATGACAGTAGGAGCTGGCACCATTGATCGGAGCTTCGTGGCAACAATGACTCTTGGAAATGGCTTAGTAGTGGAAGGGACATCATACTTCCCACAGAGCATTTACATTACTAATGCACCTCTGTACTACGGAAGAGGGGATGCAAACAAAGAGACATGCAAGCTTTCAGCTTTGGATCCAAATGAGGTAGCTGGAAAGGTAGTCCTCTGTGACAGTACAGAGACTGATGTTTATACACAGATACAGGAGGTTGAAAGTGCAGGTGCATATGCGGGCATCTTCATTACCGATAATCTGTTGTTGGATCCAGATGAGTACTCCATTCCTAGCCTGGTTCTGCCAACTAATTCTGGGACTTCAGTCCTGGAGTACGTAACAGGAATGAGTAATGCAACAGTGAAGGCCCTAAGGTTCGTGTCAACGAAGTTGGGTACAAAGCCAGCACCTCAAGTGGCTTATTTCTCTTCTAGAGGACCCGACCCAATTAGTCCGGGTGTTCTGAAACCAGATATTCTTGCTCCTGGAGTGGATGTATTGGCAGCAGTTGCACCCAACGTGCCATTCATGCAAATTGGTGACTATGATTTGGTGACAGATTATGCACTATTCTCCGGCACATCAATGGCAGCACCTCATGTTGCTGGAGTTGCAGCATTGTTGAAGGCTGTCCACCGTGATTGGAGCCCAGCAGCCATCCGATCAGCTATCATGACTACCGCAAATACTATAGACAATATTGGCTCTGCTTTTAGAGACCAATGGACAGGACTTCCCGCTTCTCCTCTAGATTTTGGCGCTGGCCATATCAATCCCAACAAAGCCATGGATCCTGGACTCATCTTCGACATGGATTTGCAAGATTATGTTGAGTTCTTATGCGGCCTTGGCTACACTAGGAAGCAGATGAGTGCCATCCTCAGACGCAACCAATGGAACTGCAGTGGGAAACCTAATGACCTCAATTATCCTTCATTTGTGGCCATATTTACTAAAGGAGCAGAGTCTCCAAAAGTAAGGAACTTCAGCAGGGTACTGACAAACGTGGGGAATGATACAGCAACTTACCAGGCAGTTGTAGAGGTTCCTACTGGAATGAGAATCAAAACAGAGCCCAGTATTCTCACATTCACTAGCAAATACCAGAAGCGAGGTTTCTTCGTGACCGTAGAGATTGATGCAGATGCTCCCAGTGTCACCTATGGTTATCTGAAATGGATTGATCAACACAAGCACACTGTATCAAGCCCCATAGTGGCCATCTATAATAAGTGA 2301 47.02 MSRVRSSRSLFSHHAVLSWLLLLLLGINNAMSELEERQTYIIHMDHSYKPDSFSTHESWHLSTLKSVSTSPVNHKEMLLYSYSHVMQGFSARLTPSELSQLEKSPAHRATYRETFGKLFTTHTTKFLGLKPNSGIWPAASYGDGVIIGIIDTGIWPESRSFSDKGMSPVPERWKGQCEYGTAFSQSCCNRKLVGARSFSKGLIAAGRNISTELDFDSARDNVGHGTHTSSTAAGNYVLGASHFGYARGSARGVAPRAHLAMYKVLWATDTYESAATDVLAGMDQAIVDGVDIMSLSLGFDQTPYFSDVIAIASLSAIEQGIFVVCATGNDGGTSSTHNGAPWIMTVGAGTIDRSFVATMTLGNGLVVEGTSYFPQSIYITNAPLYYGRGDANKETCKLSALDPNEVAGKVVLCDSTETDVYTQIQEVESAGAYAGIFITDNLLLDPDEYSIPSLVLPTNSGTSVLEYVTGMSNATVKALRFVSTKLGTKPAPQVAYFSSRGPDPISPGVLKPDILAPGVDVLAAVAPNVPFMQIGDYDLVTDYALFSGTSMAAPHVAGVAALLKAVHRDWSPAAIRSAIMTTANTIDNIGSAFRDQWTGLPASPLDFGAGHINPNKAMDPGLIFDMDLQDYVEFLCGLGYTRKQMSAILRRNQWNCSGKPNDLNYPSFVAIFTKGAESPKVRNFSRVLTNVGNDTATYQAVVEVPTGMRIKTEPSILTFTSKYQKRGFFVTVEIDADAPSVTYGYLKWIDQHKHTVSSPIVAIYNK* 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8641103 8643404 - Vvi18g747 Vvi18g747 780450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g747 766 CDD PA_subtilisin_like 358 477 - -
Vvi18g747 766 Gene3D Peptidase S8/S53 domain 144 631 IPR036852 GO:0004252|GO:0006508
Vvi18g747 766 CDD Peptidases_S8_3 117 584 IPR034197 -
Vvi18g747 766 ProSitePatterns Serine proteases, subtilase family, serine active site. 548 558 IPR023828 -
Vvi18g747 766 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 27 119 IPR037045 -
Vvi18g747 766 Gene3D - 635 764 - -
Vvi18g747 766 ProSiteProfiles Serine proteases, subtilase domain profile. 121 618 - -
Vvi18g747 766 Pfam Subtilase family 142 593 IPR000209 GO:0006508|GO:0008236
Vvi18g747 766 Pfam PA domain 393 460 IPR003137 -
Vvi18g747 766 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.9 24 765 - -
Vvi18g747 766 PRINTS Subtilisin serine protease family (S8) signature 142 161 IPR015500 -
Vvi18g747 766 PRINTS Subtilisin serine protease family (S8) signature 220 233 IPR015500 -
Vvi18g747 766 PRINTS Subtilisin serine protease family (S8) signature 547 563 IPR015500 -
Vvi18g747 766 SUPERFAMILY Subtilisin-like 118 622 IPR036852 GO:0004252|GO:0006508
Vvi18g747 766 Pfam Fibronectin type-III domain 662 761 IPR041469 -
Vvi18g747 766 Gene3D - 352 487 - -
Vvi18g747 766 Pfam Peptidase inhibitor I9 39 106 IPR010259 -
Vvi18g747 766 PANTHER PEPTIDASE S8 24 765 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g747 - - - vvi:100248833 1477.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g396 Vvi18g747 ECH
Vvi3g538 Vvi18g747 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g747 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00038 . Bma05g00049 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012008 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 3 30