Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g75 ATGGCTGGAAGCTGGGATGGGAGTTATGACCCTGGTAGCCAGTCAGATGAGAGCCATCATTTTGAGAGGTCACATTTAGAGCCTATCTATGATTCTTTCGTTTGCCCTCTAACAAAGCAAGTTATGCGTGATCCTATTACCTTAGAAAATGGGCAAACTTTTGAGCGAGAAGCAATCGAGAAGTGGTTCAAGGAATGCAAAGAGAGTGGAAGGAAGCTGGTTTGCCCCTTAACATTAAAAGAGTTAAGAAGCACAGATCTGAATCCTAGTATAGCTTTGCGGCACACCATTGAGGAATGGACTGCTAGAAATGAAGCTGTTCAACTTGATATGGCTCGTAGATCATTATCTCTGGGCAGCCAGGAAGTTGACATTCTGCTTGCTTTGAAGAATGTGCAGTACCTGTGCCTGAAAAGTCGATCAAATAAGCATATTGTGCGGAATGCAGATCTGATTCCCATGATTGTTGACATGTTGAAAAGCGGCAGCCGCAGGGTTCGGTGTAGAGCTTTAGAAACACTTCGAATCGTGGCTGAAGAAGACGCTGAGAATAAGGAAATAATGGCCGAGGGGGACACTATACGCACAATAGTTAAATTTTTGTCTCATGAGCTTTCCAAAGAGAGGGAGGAAGCTGTCTCTTTGTTGTATGAGCTTTCCAAATCTGAAACTTTGTGTGAAAAGATTGGCTCACTCAATGGAGCAATTCTTATATTAGTTGGAATGACAAGCAGCAAATCAGAAAATTTATTGACTGTTGAGAAGGCTGATAAAACACTGGAGAATCTTGAGATGTGTGAGAATAATATACGGCAGATGGCTGAAAATGGTCGACTGCATCCACTTCTTACTCAAATCCTTGAAGGTCCTCCAGAAACTAAATTGTCCATGGCTACTTACCTTGGTGAGCTGGTTCTGAACAATGATATGCAAGTCTTTGTGGCTAGAACTGTGGGCTTAGCGCTAATAAATATGATGAAAAGTGGCAACCTGCAATTGAGAGAAGCTGCTTTAAAAGCTTTAAACCAGATTTCATCTTTTGATGCCAGTGCCAGGGTGTTGATAGAGGAAGGAATTCTCCCCCCTCTCATCAAGGACCTCTTAACTGTTGGGACCAACCAACTTCCCATGCGACTCAAAGAGTCCACAACCTACTCCATCTCATTAGCAACACTGGCCCGGCAATTGAGTGCAAGCTTCTTCAGGTTCTTGTTGGACTCACCAATTCTCCCACTGCAGTCCTGGATGTTGTTGCAGCCATTAAAAGCTCTGGCGCTACCATCAGTTTGGTTCAGTTTATTGAGGCCCCACAGAAGGAATGGTCTTCTCTCGAGTTGTCAGGATCCGTACAATCTTGCTGCTGTCTTCACTGAACTGCTCCAGTCTAATGGCCTTGACAAGGTACAGATGGTTTCTGCCATGTCCCTAGAGAACCTATCACAAGAATCCAAAAACTTGACAAAGTTGCCTGAGTTGCCAGCACCTGGGTTTTGTGCCTCAATCTTTCCTTGTTTGAGCAAGCAGCCTGTCATAACTGGATTGTGTCGTCTCCACCGTGGCACGTGCTCGCTAAAAGATAGTTTTTGCCTTTTGGAAGGACAGGCCGTGGAGAAGTTGGTCGCTCTTTTAGACCACCAAAATGAGCAGGTTGTTGAAGCAGCACTGGCAGCAATATCAACTTTGAGAGCCGTTTGGGCTGTTGAGAGAATTTTGAGGACTGATGAAATAGCTTATGAAATTTCTGGAGATCCAAATGTGAGCACAGCCCTCGTTGACGCCTTCCAGCATGCTGACTATCGGACCCGGCAGATTGCCGAGCGTGCCCTGAAACACGTGGACAAGATACCAAACTTCTCAGGCATCTTTCCAAACATAGGATAG 1881 44.92 MAGSWDGSYDPGSQSDESHHFERSHLEPIYDSFVCPLTKQVMRDPITLENGQTFEREAIEKWFKECKESGRKLVCPLTLKELRSTDLNPSIALRHTIEEWTARNEAVQLDMARRSLSLGSQEVDILLALKNVQYLCLKSRSNKHIVRNADLIPMIVDMLKSGSRRVRCRALETLRIVAEEDAENKEIMAEGDTIRTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSLNGAILILVGMTSSKSENLLTVEKADKTLENLEMCENNIRQMAENGRLHPLLTQILEGPPETKLSMATYLGELVLNNDMQVFVARTVGLALINMMKSGNLQLREAALKALNQISSFDASARVLIEEGILPPLIKDLLTVGTNQLPMRLKESTTYSISLATLARQLSASFFRFLLDSPILPLQSWMLLQPLKALALPSVWFSLLRPHRRNGLLSSCQDPYNLAAVFTELLQSNGLDKVQMVSAMSLENLSQESKNLTKLPELPAPGFCASIFPCLSKQPVITGLCRLHRGTCSLKDSFCLLEGQAVEKLVALLDHQNEQVVEAALAAISTLRAVWAVERILRTDEIAYEISGDPNVSTALVDAFQHADYRTRQIAERALKHVDKIPNFSGIFPNIG* 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 731591 736822 - Vvi18g75 Vvi18g75 779778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g75 626 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 383 - -
Vvi18g75 626 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 446 561 - -
Vvi18g75 626 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 562 624 - -
Vvi18g75 626 Gene3D - 106 310 IPR011989 -
Vvi18g75 626 Gene3D - 312 380 IPR011989 -
Vvi18g75 626 SUPERFAMILY RING/U-box 22 110 - -
Vvi18g75 626 SMART arm_5 308 346 IPR000225 GO:0005515
Vvi18g75 626 SMART arm_5 266 306 IPR000225 GO:0005515
Vvi18g75 626 SMART arm_5 181 221 IPR000225 GO:0005515
Vvi18g75 626 SMART arm_5 139 179 IPR000225 GO:0005515
Vvi18g75 626 SMART arm_5 522 563 IPR000225 GO:0005515
Vvi18g75 626 Pfam U-box domain 31 105 IPR003613 GO:0004842|GO:0016567
Vvi18g75 626 ProSiteProfiles U-box domain profile. 28 107 IPR003613 GO:0004842|GO:0016567
Vvi18g75 626 CDD RING-Ubox_PUB 33 78 IPR045210 -
Vvi18g75 626 Coils Coil 256 276 - -
Vvi18g75 626 SUPERFAMILY ARM repeat 322 614 IPR016024 -
Vvi18g75 626 SUPERFAMILY ARM repeat 120 367 IPR016024 -
Vvi18g75 626 MobiDBLite consensus disorder prediction 1 21 - -
Vvi18g75 626 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 446 561 - -
Vvi18g75 626 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 562 624 - -
Vvi18g75 626 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 383 - -
Vvi18g75 626 SMART Ubox_2 32 100 IPR003613 GO:0004842|GO:0016567
Vvi18g75 626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 105 IPR013083 -
Vvi18g75 626 Gene3D - 440 617 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g75 - - - vvi:100252979 742.265
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g75 Blo01g01639 . . . Bpe02g00304 . . Bma01g02413 Cmo05g00990 . . . . . . . . Bhi04g01222 . . . . . . Cla08g00936 Cam08g1383 Cec08g0964 Cco08g1083 Clacu08g1090 . Cre08g0873 . . Cone17ag1462 . . . . Cme03g01335 . Blo18g00742 Bda11g00977 Bda01g01564 Bpe02g01758 . Bma01g00699 . . . . . Cma05g00970 Car05g00854 . Cpe11g00782 . . . . . . . . . . . . . . . Lsi08g00778 . Chy03g00609 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006312 2 1 2 2 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 0 2 2 1 38