Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g753 ATGGACGGAACGGAGGTGGTCGTGGCTTCGTCCCCTGTAGATGCCGGCATCAGTTGCTGGGACCTGCAGTCAGGGGCGGAGCATCTCCGTCATCGGTCCTGCGCTTCTCCTCCTCACGGCCTCGTCTGCGTCGCCGACCGCTTCTTTGCCTCTTCTCAGCTCCGCGACTCCTCCTCCTCCTCCTCCTCCGGCTCCATTTTCTATTGGTCCTGGTCTAAGCCACAGGTGGAAGTTAAGAGCTTTCCCGCTGAACCAATCAAGCCGCTAGCGGCTAACCGTGAGGGAACTTACATTGCTGGAGGGGGTTTATCAGGGGATATATATTTTTGGGAGGTTGCCAGTGGTAGGCTTCTTAAGAAGTGGCATGCTCATTATAGGGCTGTTACTTGCTTAGTGTTTTCTGATGATGAATCGCTACTTATTTCTGGGGCAGAGGATGGATGCGTGCGGGTTTGGTCCCTTTTCATGATATTTGATGATTTGAGGAGGGAGGAAGCAGGACACCTATATGAGCATAGTTTCTCTGAGCACACTTTGCGGGTTACTGATATTGTCACGGGCTATGGAGGAGGCAATGCAATTATAGTGTCTGCTTCTGAGGATAGAACCTGTAAGGTTTGGAGCTTGTCTACGGGGAGATTGTTAAGAAATGTTGTATTTCCCTCGATAATTGATGCAATTGCATTGGACCCTGGGGAACATGTTTTCTATGCTGGCAGTAGAGATGGCAAGATATATATTGCTGCACTAAATGCCGTAGGCTCCTCTAGCAACTCTTATGGGATGCATATTATTGGCTCATTGTCTGATCACAGTAAGGCTGTTACTTGCTTAGCATTTGCTACGGATGGGATCTTATTGGTTTCTGGATCAGAGGATGGAATGGTACGAGTCTGGGACACTAAAACCCGTAACATCTTTCGCATTTTCAAGCATGCAAAAGGTCCTGTGAGCAATATTCTTGTTGTTAGGCGACCTAATGACTCAAACCCTCGGAATTCACAAACTTCCTCAAAGAAGCATGGGTCATTCTTATCACCTCCACTTGATAAATATTTGAATTCGTCTGATGAAAATGAAGATGCTAAGGTCTTCATCGGTTGCCAGACTACATTCAGTAAATCTGTGGATGCTTCATACCGCAGTTGTCACATCATTATTGATCAAATCAAAGAACTCCAGCAACAAGGGTCTTCAGCTGCTACTGAAATGGAGATGGAGAGATTGAAGATTGATTCCCAAAAATCTGTGCAAATGGTACAACAATGGAAGAAAATGTATGAAAACTTGCATCAATTCTGTGTAAATGAGCTTTTGGATGCAGACCATGCAGGAGTCTCCAATTGA 1347 46.1 MDGTEVVVASSPVDAGISCWDLQSGAEHLRHRSCASPPHGLVCVADRFFASSQLRDSSSSSSSGSIFYWSWSKPQVEVKSFPAEPIKPLAANREGTYIAGGGLSGDIYFWEVASGRLLKKWHAHYRAVTCLVFSDDESLLISGAEDGCVRVWSLFMIFDDLRREEAGHLYEHSFSEHTLRVTDIVTGYGGGNAIIVSASEDRTCKVWSLSTGRLLRNVVFPSIIDAIALDPGEHVFYAGSRDGKIYIAALNAVGSSSNSYGMHIIGSLSDHSKAVTCLAFATDGILLVSGSEDGMVRVWDTKTRNIFRIFKHAKGPVSNILVVRRPNDSNPRNSQTSSKKHGSFLSPPLDKYLNSSDENEDAKVFIGCQTTFSKSVDASYRSCHIIIDQIKELQQQGSSAATEMEMERLKIDSQKSVQMVQQWKKMYENLHQFCVNELLDADHAGVSN* 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8713429 8718488 + Vvi18g753 Vvi18g753 780456

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g753 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 217 IPR001680 GO:0005515
Vvi18g753 448 Pfam WD domain, G-beta repeat 116 153 IPR001680 GO:0005515
Vvi18g753 448 Pfam WD domain, G-beta repeat 172 208 IPR001680 GO:0005515
Vvi18g753 448 Pfam WD domain, G-beta repeat 265 300 IPR001680 GO:0005515
Vvi18g753 448 SMART WD40_4 261 300 IPR001680 GO:0005515
Vvi18g753 448 SMART WD40_4 167 208 IPR001680 GO:0005515
Vvi18g753 448 SMART WD40_4 74 111 IPR001680 GO:0005515
Vvi18g753 448 SMART WD40_4 114 153 IPR001680 GO:0005515
Vvi18g753 448 SMART WD40_4 211 249 IPR001680 GO:0005515
Vvi18g753 448 PANTHER WD-REPEAT PROTEIN 18 1 438 IPR045227 -
Vvi18g753 448 PANTHER WD REPEAT-CONTAINING PROTEIN 18 1 438 - -
Vvi18g753 448 PRINTS G protein beta WD-40 repeat signature 140 154 IPR020472 -
Vvi18g753 448 PRINTS G protein beta WD-40 repeat signature 195 209 IPR020472 -
Vvi18g753 448 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Vvi18g753 448 SUPERFAMILY WD40 repeat-like 13 321 IPR036322 GO:0005515
Vvi18g753 448 MobiDBLite consensus disorder prediction 323 347 - -
Vvi18g753 448 ProSitePatterns Trp-Asp (WD) repeats signature. 287 301 IPR019775 -
Vvi18g753 448 Gene3D - 1 220 IPR015943 GO:0005515
Vvi18g753 448 MobiDBLite consensus disorder prediction 322 347 - -
Vvi18g753 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 121 154 IPR001680 GO:0005515
Vvi18g753 448 Gene3D - 221 330 IPR015943 GO:0005515
Vvi18g753 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 303 - -
Vvi18g753 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Vvi18g753 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 121 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g753 K14829 IPI3; pre-rRNA-processing protein IPI3 - vvi:100264347 885.174
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g753 Blo01g01526 . Bda01g00570 . Bpe02g00431 . . Bma01g02270 . . . . . . . Cpe06g00165 . . . . . . . . . . . . . . . . . . . Lsi04g01549 Csa04g02420 . . . . . . . . . . Sed09g0365 . Cmo09g00230 . . . . . Cpe02g00186 Bhi09g03308 Tan01g4765 Cmetu07g1918 . Hepe01g1773 Mch11g0299 . Cla05g02050 Cam05g2202 Cec05g2219 . Clacu05g2194 Cmu05g2060 . . . Chy07g00141 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003200 1 2 2 1 1 1 1 1 1 1 1 1 2 1 2 3 1 2 2 1 1 1 2 1 2 1 3 2 8 1 50