Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g754 ATGGATATTGACCTGTTAAAGTCTGCCCCAGAAGATCAGATGGAGATGATGATGATGCAGATGGACAAGCTTCCCGAATTCTGCGGGACCTATAATGAAATGGCCGAATTGCCGTCGATGGGGTTTTCTGGAGGTGGCAGTGCTACCATGCCTCAAATCTTTGATAACCCACATGTTGCTTCACCCACATTCATAAACTCACCCTCCACCATATCATTCAACGGAACCACGCCTCCCCAAGAACCAACTGCACCGGCCTTTTTAACCAATTCAGCTGTAGCGAGATGGAGGGGCACCGGAGAATTATCTGGTGTGTGCAATTTGTCTACACCAGCTCAGAAGCGAAATTCCATGGCGGCCATGAGGGAGATGATATTCCGGATTGCAGCCATGCAGCCCGTTCACATAGACCCAGAATCGGTGAAGCCGCCAAAGCGGAGGAACGTGAAGATATCAAAGGACCCTCAGAGCGTTGCTGCACGTCATCGGAGAGAAAGGATAAGCGAGAAAATAAGGATACTTCAAAGACTAGTCCCTGGAGGAACCAAAATGGACACAGCTTCCATGCTGGACGAAGCAATTCACTATGTGAAGTTTTTGAAGACCCAGGTGCAATCCCTGGAGCGAGCCGCTGCTAATAGGCCGGCCGGCATTGGATTCCCGGTAACCATGTCTAATGGGAGTTATCTTCCCATCACAAAACAATACCAACCTTCCCAAAACCTTCACCATTATCCAGATGCTTAA 747 49.0 MDIDLLKSAPEDQMEMMMMQMDKLPEFCGTYNEMAELPSMGFSGGGSATMPQIFDNPHVASPTFINSPSTISFNGTTPPQEPTAPAFLTNSAVARWRGTGELSGVCNLSTPAQKRNSMAAMREMIFRIAAMQPVHIDPESVKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAGIGFPVTMSNGSYLPITKQYQPSQNLHHYPDA* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8724789 8727096 + Vvi18g754 Vvi18g754 780457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g754 248 Gene3D - 150 216 IPR036638 GO:0046983
Vvi18g754 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Vvi18g754 248 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 241 IPR045843 GO:0003700|GO:0006355
Vvi18g754 248 CDD bHLH_AtIND_like 152 208 - -
Vvi18g754 248 Pfam Helix-loop-helix DNA-binding domain 160 200 IPR011598 GO:0046983
Vvi18g754 248 SMART finulus 157 206 IPR011598 GO:0046983
Vvi18g754 248 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 1 241 - -
Vvi18g754 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 210 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1063 Vvi18g754 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14358 PF00010 HLH 1.40E-06 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g754 - - vvi:100247090 485.337