Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g762 ATGGACGGCGCCGATGGAACCGTGAAGTTTGGGCCGCTTAACATGAAGGCCGATCCATATCTAGATTGTGCACAGGACGTGGCGGTTTCGTCGCCTGTGACGAGGCAGAAGGCCGCTGCTGCCAAGCAGTTTATTGAGAATCATTACAAGAACTACCTTCAAGGCTTGCAAGATCGCAAAGAGAGACGTAGAGCACTTCAGAGAAGAGCACAGGAAGCTCAGGTTTCAAATGAGGAGCAAGAGCAGATGCTAAGGAGTTTGGAACGCAAAGAAACTGAGTATATGAGACTTCAAAGACATAAAATTAGAATTGATGACTTTGAACAATTGACTATCATTGGCAAAGGTGCATTTGGCGAGGTTAGGTTATGTCGTGGTAAAAGTACCGGAGAGATTTTTGCCATGAAGAAATTGAAGAAATCAGAGATGCTTAGCCGTGGACAGGTTGAGCATGTTCGGTCAGAAAGGAACTTGCTTGCAGAGGTTGATAGTCGGTGCATTGTAAAGCTCTTCTATTCTTTCCAAGACTCTGATTTCTTGTACCTTATCATGGAGTATTTACCTGGTGGTGATATTATGACTTTACTGATGAGAGAAGATGTTCTTTCTGAAGATGTTGCACGTTTTTACATAGCAGAGAGCATTCTAGCTATTCACTCAATTCATCAACACAGCTATGTCCATAGAGACATAAAGCCAGATAACTTGATATTGGACAAGAATGGGCATTTGAAGCTTTCAGATTTTGGCTTGTGTAAGCCACTGGATGACAAATATTCAACAATATTATTGGAAAATGATGTTTTTAATACCCAGGAATCCACAAGTGAAACTGAGGGATATTCGGGATATGACAGAGCCCCTTGGTCAATGCCAAAAGAACGATTGCAACAATGGAAACGTAACCGTCGTGCATTGGCTTATTCTACTGTTGGTACTCTTGATTATATGGCGCCTGAAGTCTTGCTGAAGAAAGGATATGGTATGGAGTGTGATTGGTGGTCGTTGGGGGCAATCATGTATGAAATGCTCATAGGCTACCCTCCTTTTTGTTCTGATGATCCAAGGATCACATGCCGCAAGATTATCAATTGGAAAACATGCTTGAAATTGCCTGAGGAACCCAAAATATCTGATGAAGCTAAGGATCTGATCTGTCATTTGCTATGTGATGTTGAAACAAGGCTGGGGACTGGAGGAGTGGAAGAAATAAAGGCACATCCATGGTTTAGATGTATTCAATGGGACAAGCTATATGAAATGGAAGCTGCTCATAAACCTACTGTTACTGGAGAGCTAGACACCCAGAATTTCGAGAAGTTTGATGAAGTAGAAGGTCCACCATCAACAATACCGAGAGTGGGACCTTGGAGAAAGATGTTGACATCAAAAGATGCCAATTTCATAGGATATACTTTCAAGAAATCAGATATCATGAAATCAATTGGAACTTCAGGTACAGACGTTAGATCTAATGGATCTTCAAAGGCCCCCTCTCTGGTTTCATTGTTTGGCCAGATTGACCTTCAAGAAACTGCAACAGAGGATGAGGAGAAGGAGGATGCTTTAGTTTTTTAA 1578 41.89 MDGADGTVKFGPLNMKADPYLDCAQDVAVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKERRRALQRRAQEAQVSNEEQEQMLRSLERKETEYMRLQRHKIRIDDFEQLTIIGKGAFGEVRLCRGKSTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSDFLYLIMEYLPGGDIMTLLMREDVLSEDVARFYIAESILAIHSIHQHSYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSTILLENDVFNTQESTSETEGYSGYDRAPWSMPKERLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLIGYPPFCSDDPRITCRKIINWKTCLKLPEEPKISDEAKDLICHLLCDVETRLGTGGVEEIKAHPWFRCIQWDKLYEMEAAHKPTVTGELDTQNFEKFDEVEGPPSTIPRVGPWRKMLTSKDANFIGYTFKKSDIMKSIGTSGTDVRSNGSSKAPSLVSLFGQIDLQETATEDEEKEDALVF* 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8790187 8809595 + Vvi18g762 Vvi18g762 780465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g762 525 Gene3D Transferase(Phosphotransferase) domain 1 309 428 - -
Vvi18g762 525 Gene3D Transferase(Phosphotransferase) domain 1 191 259 - -
Vvi18g762 525 SMART pkinase_C_6 411 475 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi18g762 525 Pfam Protein kinase C terminal domain 429 473 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vvi18g762 525 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Vvi18g762 525 ProSiteProfiles AGC-kinase C-terminal domain profile. 411 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi18g762 525 Gene3D Phosphorylase Kinase; domain 1 429 439 - -
Vvi18g762 525 Gene3D Phosphorylase Kinase; domain 1 104 190 - -
Vvi18g762 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Vvi18g762 525 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 5 522 - -
Vvi18g762 525 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 522 - -
Vvi18g762 525 SUPERFAMILY Protein kinase-like (PK-like) 81 461 IPR011009 -
Vvi18g762 525 Coils Coil 56 97 - -
Vvi18g762 525 ProSiteProfiles Protein kinase domain profile. 107 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g762 525 SMART serkin_6 107 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g762 525 CDD STKc_NDR_like 105 474 - -
Vvi18g762 525 Pfam Protein kinase domain 107 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76394 PF00069 Pkinase 2.00E-64 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g762 K08790 - vvi:100257460 1046.96