Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g768 ATGGTAGCCGACTTTTGTATTAATTTTACAAGTTGGTTGGATAAAATTGAAAATCTAAATTTATCAAGGGGTGTATACCACTGCTGGTTAGCATATAGCATATCCAGGTCCATTCCCTTGATACCACTCCGGTTAGCATATACAGGTCCACGCCTCACCGCAAGAATTGCAATACCCATTCCTGATTTCAATTCCAAGGCTTCAATAACCCAACTGTGTTTCAGATTATCCCAATTCAATGTAATGAGTATGAGCTCGGCCTATACCATAGGTCACTATGTTCGTACTACTCTCCCTCGTATTGGACTCGAATTCATTCTTCCATCTATTCCAAATATCTCCGTCTTCCATTCTCTTTTTAAATCATGTAGTGAAACCAAAGATTCGAGATGGGCATTTATTACTTTTCGTCGATTGTTAGAGTCTAACGTGAAGCCAAGTGATCTTACCTTCTCTTTGCTCATCAAAGCTTATGTTGCCGATGCTTCTTCTTCAACTGTTATTGATTCACCAAATACAAAAATAGAAGCAAATCAGATTCAAACCCACCTCAGAAAATCTGGGTTTAATCAATATGTGTACTTGACCACTGCTTTTCTCGACTTCTATGGGAAATTGGGATGCATCTATTATGCCCAACATTTATTTGAAGAAATGCCCAGAAGAGATGTTGTATCTTGGAATGCGTTGATTTGTGGGTATTCTCGCAATGGATATGATTATGATGCGTTGGAAGTGTTTGTCCAAATGCTCAGAGAGGGCTTTCCTCCTTGTCAGAGAACGCTGGTTGGTTTAGTTCCGTCTTGTGGTCGGCCAGATATAATCTTTCAAGGGAAGGCTATTCATGGATTTGGAATTAAGTCTGGACTTGACTTGGATTGCCGAGTGAAGAATGCATTAACTTCGATGTACGCTAAATTTTCATGGAATACTATGATTGGTGCCTATGGCCAAAATGGGCTATTTGACGAGGCAATGCTTGTATTTAAACAAATGCAAAAGGAAAGGGTGGAAGTCAATTACGTTACAATCATAATGTGTTCCTATGCTGGGTGTGGGAATATTGAATCAGCGGGACTACTTTACAATTTAATGCCTCAAAGGAACTTGGTTTCCTTAACTGCAATGATTTCAGGCTACGCTGAGAAAGGCAATATGGGTTTGGTGGTGGAGTGTTTTACTCAAATGTTGCAGTTAAAAATGAAACCAGATGCGGTTGCTATGGTTAGCATTCTTCATGGGTTCACAGACCCTACTTTCATTGGGTCTGGGCTAGGGATCCATGCTTATGGATTGAAGACTGGCTTGTGTGCTGATTGTTTAGTGGTGAATGGGCTGATTAGCATGTACTCAAAGTTTGGTGACATAGAAACAGTATTCTCTTTATTTTCTGAGATGGGTGAAAAACAACTAATCAGTTGGAATTCAGTGATTTCGGCCTGCATACAGGTTGGAAGAACAAGTGATGCTATGGAGTTGTTCTGCCAGATGAGGATGTATGGACACAGTCCTGATGCCATTACTATTGCTAGTTTATTAGCAGGGTGTTCTGAAGTTGGTTTTCTGCAGTTTGGGGAGAGGCTCCATAACTATGTTCTCAGAAACAATCTTGACATGGAAGATTTTCTGGAAACTGCTCTTGTAGACATGTATATCAAGTGTGGAAGGTTAGAGAGTGCAGAGAGGGTGTTTAAGAGCATTAAAGAGCCGTGTTTGGCAACATGGAACACAATGATTTCAGGCTATGGATTATCTGGGCATGAACATAGAGCTCTCAGTTGTTACTCTGAAATGCAAGAACAAGGACTAAAACCTGACAGAATCACTTTTTTGGGAGTATTATCTGCTTGTACCCATGGGGGGCTTGTTTGGGAGGGAAAACGATACTTTCGAAGTATGAGGGAAGACTTTGGTATGATTCCAGGATTGCAACACAATGCATGCATGGTTGATCTCCTCAGTCGAGCAGGATTTTTAGAGGAAGCAGTAATATTTGTCAAGAATATGGAGGTTGAGCCTGATTCTGCCATATGGGGAGCTTTGCTTACCTCTTGTTGCATCCACCAAGAGCTGAAGCTTGGGGAGTGTTTGGCCAAAAGGTTACTCCTATTGGATTATTACAGTGGTGGATTATATGTGTTGATGTCAAATCTTTATGCAAGTAAAGGAAGGTGGGATGATGTAGCAAGGGTGAGGAAAATGATGAAAGATACTGGCGGAGATGGATCTTCTGGAATTAGCCTAATTGAGTTTTTCCTTGGCAACAAGGTCAAAGAAGGAGCCGCTCTCATATTTGTACAATACTAA 2307 40.79 MVADFCINFTSWLDKIENLNLSRGVYHCWLAYSISRSIPLIPLRLAYTGPRLTARIAIPIPDFNSKASITQLCFRLSQFNVMSMSSAYTIGHYVRTTLPRIGLEFILPSIPNISVFHSLFKSCSETKDSRWAFITFRRLLESNVKPSDLTFSLLIKAYVADASSSTVIDSPNTKIEANQIQTHLRKSGFNQYVYLTTAFLDFYGKLGCIYYAQHLFEEMPRRDVVSWNALICGYSRNGYDYDALEVFVQMLREGFPPCQRTLVGLVPSCGRPDIIFQGKAIHGFGIKSGLDLDCRVKNALTSMYAKFSWNTMIGAYGQNGLFDEAMLVFKQMQKERVEVNYVTIIMCSYAGCGNIESAGLLYNLMPQRNLVSLTAMISGYAEKGNMGLVVECFTQMLQLKMKPDAVAMVSILHGFTDPTFIGSGLGIHAYGLKTGLCADCLVVNGLISMYSKFGDIETVFSLFSEMGEKQLISWNSVISACIQVGRTSDAMELFCQMRMYGHSPDAITIASLLAGCSEVGFLQFGERLHNYVLRNNLDMEDFLETALVDMYIKCGRLESAERVFKSIKEPCLATWNTMISGYGLSGHEHRALSCYSEMQEQGLKPDRITFLGVLSACTHGGLVWEGKRYFRSMREDFGMIPGLQHNACMVDLLSRAGFLEEAVIFVKNMEVEPDSAIWGALLTSCCIHQELKLGECLAKRLLLLDYYSGGLYVLMSNLYASKGRWDDVARVRKMMKDTGGDGSSGISLIEFFLGNKVKEGAALIFVQY* 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8856215 8859960 + Vvi18g768 Vvi18g768 780471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g768 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Vvi18g768 768 Pfam PPR repeat family 472 516 IPR002885 -
Vvi18g768 768 Pfam PPR repeat family 570 617 IPR002885 -
Vvi18g768 768 TIGRFAM PPR: pentatricopeptide repeat domain 472 506 IPR002885 -
Vvi18g768 768 TIGRFAM PPR: pentatricopeptide repeat domain 371 405 IPR002885 -
Vvi18g768 768 TIGRFAM PPR: pentatricopeptide repeat domain 574 606 IPR002885 -
Vvi18g768 768 TIGRFAM PPR: pentatricopeptide repeat domain 225 257 IPR002885 -
Vvi18g768 768 TIGRFAM PPR: pentatricopeptide repeat domain 307 340 IPR002885 -
Vvi18g768 768 PANTHER OS07G0578800 PROTEIN-RELATED 358 752 IPR045215 GO:0003723|GO:0009451
Vvi18g768 768 PANTHER OS07G0578800 PROTEIN-RELATED 139 306 IPR045215 GO:0003723|GO:0009451
Vvi18g768 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Vvi18g768 768 Gene3D Tetratricopeptide repeat domain 289 344 IPR011990 GO:0005515
Vvi18g768 768 Gene3D Tetratricopeptide repeat domain 345 418 IPR011990 GO:0005515
Vvi18g768 768 Pfam PPR repeat 225 255 IPR002885 -
Vvi18g768 768 Pfam PPR repeat 444 469 IPR002885 -
Vvi18g768 768 Pfam PPR repeat 197 223 IPR002885 -
Vvi18g768 768 Pfam PPR repeat 307 336 IPR002885 -
Vvi18g768 768 Pfam PPR repeat 371 398 IPR002885 -
Vvi18g768 768 Pfam PPR repeat 545 569 IPR002885 -
Vvi18g768 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Vvi18g768 768 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 358 752 - -
Vvi18g768 768 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 139 306 - -
Vvi18g768 768 Gene3D Tetratricopeptide repeat domain 420 541 IPR011990 GO:0005515
Vvi18g768 768 Pfam Pentatricopeptide repeat domain 111 159 IPR002885 -
Vvi18g768 768 Gene3D Tetratricopeptide repeat domain 110 281 IPR011990 GO:0005515
Vvi18g768 768 Gene3D Tetratricopeptide repeat domain 546 751 IPR011990 GO:0005515
Vvi18g768 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Vvi18g768 768 Pfam E motif 688 750 IPR046848 -
Vvi18g768 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g768 - - - vvi:100250665 1315.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g768 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1573 Cone7ag1379 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013988 0 1 0 0 0 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 22