Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g78 ATGGAGCTGTTTGATGCGTATTTTAGAAGAGCGGATTTGGATGGGGATGGGAGGATCAGTGGAGCTGAAGCCGTTGCGTTCTTTCAAGGATCCAATTTGGCCAAACATGTTCTGGCTCAGGTGTGGATGCATGCTGATCCGGCGGGCACTGGTTTCCTTGGTCGGGCAGAATTTTATAATGCTCTTAAACTTGTAACTGTGGCACAGAGTAAGCGAGAATTAACACCAGATATTGTGAAGGCGGCATTATATGGTCCAGCTGCAGCTAAAATTCCTGCACCACAAATAAATCTTGCTGCAATACCTTCACCTCAACCAAATCAGATGACTACTACACCAGCCCCACAAATGGGTGCAGTTGCACCAACAGCATCTCAAAATCTTGGCTTCCGAGGACAAACACTTCCAAATCCTAGCACAAACCAACAATATTTTCCTTCTCAGCAAAATCAGTTTATGAGACCGCCTCAACCCATGCCTGCTGGAAGCGCTTCACGTCCACCACAGAATCTTGCAGGGCCAGAACTTAACAGGGGAGGTAATATGGTTGGTCCTGGGGTGCCAAACTCAAACATTTCAAGTGATTGGCTCAGTGGAAGAACTGCTGGAGCTCCAACTGGGCCACTGTCACAGGTCCCTAATAGAGGGATAACTCCATCAATGCCCCCACCTACAACAAAACCACTAGATCTGGCTTCAACTCCTAAAGCACCAGTTGTTTCTGGGAATGGGTTTGCTTCTGACCCAGTTTTTGGTGGTAATGTGTTCTCTGCAACCCCAACTCAACAAAAAAGAGATTCTTCTGGGTTGACTTATTCTGTTAGTAGCTCACCTGCCTCATCAGTTGCTTTAAGTCCAGCACCTACTGGGTCCCCGTCCCTCTCCAAGCCTAGTTCACTGGACTCATTGCAGAGTGCTTTCACCATGGGACCTGCAGGTGGTCAGATTCAGCGTGCCCAGTCAGCAGGGAACCTAAACCAGCCTGCTCCTCCCCAGAGTACTTCTCCTCTTTCATCATCTGGGGTTTCAGTGGGAGTTGGAAATTCTGCTTCAAACCAGTCCCAGCTTCCATGGCCAAGGATGACACCATCCGATGTTCAGAAATACACAAAAGTGTTCATTGAAGTAGACTCGGACCGAGATGGCAAAATCACTGGCGAGCAAGCACGGAACCTATTTTTGAGTTGGAGGCTGCCAAGAGAGGTTTTGAAGCAGGTGTGGGACTTATCTGATCAAGATAGTGATAGCATGCTTTCTCTGCGGGAATTCTGCACTGCACTCTATCTTATGGAGCGATATAGGGAAGGTCGGCCTCTTCCAGCAGTGCTTCCAAGCAATATTTTGTTTGATGAGACATTGTTCCCTATGATGGGCCAACAAGCTTCTTTTGGAAATGCGGCTCGGCCACCTACTCCTGGTTTGTCTCATCAACATGGGATTCCTGGTGTCCGACAAATGACAACTGCACCTGGTTTGGGGCCACCTATTCAGGTTGCACTTCAGGGTGATGGAGCAATGCAACCTAATCAGCAAAAAATAAGTGGACTGGTTTCAGAGGATGTCTTTGGGAACCAACTCAGTAATGGAGGGAAAAATGGACTCAACTTGACACATCAAGATGTAACAGATTCAGAGAAAAAGGTTGAAGCAACAGAAAATGTGATTCTGGATTCTAAAGAGAAAATTGAGTTGTACCGCACAAAAATGCAGGAACTTGTTCTATATAAAAGCAGATGTGATAATCGACTTAATGAAATCACAGAAAGGGCATCTTCAGATAAGCGGGAGGCTGAGTTTGTGACTAAGAAATATGAAGAGAAGTATAAGCAAGTTGCAGAGATAGCATCTAAACTAGCAATGGAAGATGCCAGATTTCGTGATCTTCAGGGAAGGAAGAACGAGTTGCATCAAGCAATTATCAAAATGGAACAGGGTGGCAGTGCTGATGGTATTCTTCAGGTTCGAGCTGATCGCATACAGTCAGATCTTGAAGAGCTAATCAAGGCTTTGACAGATCGTTGCAAGAAACATGGATTAGATGTTAAGTCAACTGCAATAATTGAGCTTCCCATTGGTTGGGAACCTGGATTTCAAGAGGGAGCTGCTATTTGGGATGAAGATTGGGATAAGTTTGAAGATGAAGGACTTTCGTTTGCCAAAGATTGCGCTATTGATGTGCAAAATGGAGTAGGCTCTCCTAAATCAAAATCCACATCTATTCAGAAAGATAATGCTTCGAGTTTCGGTGAACATGGCATTGAGAATGAATCTGCATATACCCACAGTGAAGATGACTTGGCTAGAAGCCCACCTGGCAGTCCAGGTGGCAGGACTTCACTAGAAAGTCCATCTCAAGAACTTTCAAACAACCATTTCAGAAAGAGCAGTGAAGCAGACACTGAAATCCATAGAAGCTTTGATGAACCAAACTGGGAACCATCCTTTGACCACAATGACGACACAGACTCCATTTGGGGCTTTAACCCCAGTACAACCAAGGACTTTGATTCTGATAAGCACAGGGAAAATGATATCTTTGGATCCGGCAACTTGGGAATAAATCCAATAAGAACCGAATCCCCACATGATGACCCATTCCAGAGAAAGAGTCCATTCAGCTTTGAGGATTCTGTTCCTAGTACTCCACTCTCCAAGTTTGGCAACTCCCCGCGGTACAGCGAGTGGGCAGGAGAGCACCACTTTGATATGAGCTCAAGGTTTGACTCCTTCAGCATGCACGATGGTGGATTTTCTCCCCCACGGGAAACTCTCACGAGATTTGACTCCATAAGCAGCAGCAGAGACTTTGGCCATGGTCAGGCAAGACCTACTCTTTTGATGACTCAGATCCGTTCGGTTCAACTGGTCCATTTAAGGTCTCATCGGACAGTCAAACTCCAAGGAAAGGTTCTGATAATTGGGGTTTCTAGTTGGCTGCTCAACCCTACTCTTCTGCCATTTGCTCTTTCCTCCTCTTCCTCCCAACTTTAA 2991 45.87 MELFDAYFRRADLDGDGRISGAEAVAFFQGSNLAKHVLAQVWMHADPAGTGFLGRAEFYNALKLVTVAQSKRELTPDIVKAALYGPAAAKIPAPQINLAAIPSPQPNQMTTTPAPQMGAVAPTASQNLGFRGQTLPNPSTNQQYFPSQQNQFMRPPQPMPAGSASRPPQNLAGPELNRGGNMVGPGVPNSNISSDWLSGRTAGAPTGPLSQVPNRGITPSMPPPTTKPLDLASTPKAPVVSGNGFASDPVFGGNVFSATPTQQKRDSSGLTYSVSSSPASSVALSPAPTGSPSLSKPSSLDSLQSAFTMGPAGGQIQRAQSAGNLNQPAPPQSTSPLSSSGVSVGVGNSASNQSQLPWPRMTPSDVQKYTKVFIEVDSDRDGKITGEQARNLFLSWRLPREVLKQVWDLSDQDSDSMLSLREFCTALYLMERYREGRPLPAVLPSNILFDETLFPMMGQQASFGNAARPPTPGLSHQHGIPGVRQMTTAPGLGPPIQVALQGDGAMQPNQQKISGLVSEDVFGNQLSNGGKNGLNLTHQDVTDSEKKVEATENVILDSKEKIELYRTKMQELVLYKSRCDNRLNEITERASSDKREAEFVTKKYEEKYKQVAEIASKLAMEDARFRDLQGRKNELHQAIIKMEQGGSADGILQVRADRIQSDLEELIKALTDRCKKHGLDVKSTAIIELPIGWEPGFQEGAAIWDEDWDKFEDEGLSFAKDCAIDVQNGVGSPKSKSTSIQKDNASSFGEHGIENESAYTHSEDDLARSPPGSPGGRTSLESPSQELSNNHFRKSSEADTEIHRSFDEPNWEPSFDHNDDTDSIWGFNPSTTKDFDSDKHRENDIFGSGNLGINPIRTESPHDDPFQRKSPFSFEDSVPSTPLSKFGNSPRYSEWAGEHHFDMSSRFDSFSMHDGGFSPPRETLTRFDSISSSRDFGHGQARPTLLMTQIRSVQLVHLRSHRTVKLQGKVLIIGVSSWLLNPTLLPFALSSSSSQL* 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 749851 760246 - Vvi18g78 Vvi18g78 779781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g78 996 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Vvi18g78 996 MobiDBLite consensus disorder prediction 730 753 - -
Vvi18g78 996 Pfam EF hand 5 21 IPR002048 GO:0005509
Vvi18g78 996 Gene3D - 360 448 - -
Vvi18g78 996 MobiDBLite consensus disorder prediction 256 362 - -
Vvi18g78 996 Gene3D - 1 90 - -
Vvi18g78 996 MobiDBLite consensus disorder prediction 184 216 - -
Vvi18g78 996 MobiDBLite consensus disorder prediction 873 888 - -
Vvi18g78 996 MobiDBLite consensus disorder prediction 131 236 - -
Vvi18g78 996 CDD EH 369 435 IPR000261 GO:0005515
Vvi18g78 996 PANTHER EH DOMAIN 1 940 - -
Vvi18g78 996 MobiDBLite consensus disorder prediction 131 156 - -
Vvi18g78 996 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1 940 - -
Vvi18g78 996 SMART eh_3 4 88 IPR000261 GO:0005515
Vvi18g78 996 SMART eh_3 357 453 IPR000261 GO:0005515
Vvi18g78 996 ProSiteProfiles EF-hand calcium-binding domain profile. 1 34 IPR002048 GO:0005509
Vvi18g78 996 MobiDBLite consensus disorder prediction 775 791 - -
Vvi18g78 996 MobiDBLite consensus disorder prediction 729 889 - -
Vvi18g78 996 CDD EH 4 70 IPR000261 GO:0005515
Vvi18g78 996 Pfam Cytoskeletal-regulatory complex EF hand 359 430 IPR000261 GO:0005515
Vvi18g78 996 MobiDBLite consensus disorder prediction 256 361 - -
Vvi18g78 996 ProSiteProfiles EH domain profile. 1 90 IPR000261 GO:0005515
Vvi18g78 996 MobiDBLite consensus disorder prediction 792 819 - -
Vvi18g78 996 SUPERFAMILY EF-hand 355 447 IPR011992 -
Vvi18g78 996 SMART efh_1 402 430 IPR002048 GO:0005509
Vvi18g78 996 SMART efh_1 3 31 IPR002048 GO:0005509
Vvi18g78 996 SMART efh_1 368 396 IPR002048 GO:0005509
Vvi18g78 996 SMART efh_1 37 65 IPR002048 GO:0005509
Vvi18g78 996 ProSiteProfiles EH domain profile. 365 448 IPR000261 GO:0005515
Vvi18g78 996 SUPERFAMILY EF-hand 2 83 IPR011992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g78 K12472 EPS15; epidermal growth factor receptor substrate 15 - vvi:100240982 1826.22
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g298 Vvi18g78 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g78 . . . . . . . . . . Cma01g02025 Cma09g00044 Car01g01591 . . Cpe06g00014 . . . . . . . . . . . . . . . . . Cone17ag1459 Cone20ag0016 Lsi04g01819 Csa04g02715 . . . . . . . . . . . . Cmo09g00045 . . . Car09g00036 . Cpe02g00029 Bhi09g02853 Tan01g5126 Cmetu07g1818 . Hepe01g2350 Mch11g0047 . Cla11g01832 Cam11g1899 Cec11g1925 Cco11g1934 Clacu11g2063 Cmu11g1868 Cre11g2276 . . Chy07g00404 Cme07g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005327 2 2 2 4 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 0 1 1 36