Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g780 ATGTCCACCAGGAGTGAACATCAAACTGTCCCGCTCTCGGTGCTGTTGAAGCGGGAATTGGCCAGTGAGAAGATTGAGAAACCTGATATTATACATGGACAGGCCAGCCAAAGCAAGAAAGGGGAGGACTTCACTTTACTCAAGACCGAATGCCAAAGGGTGGTTGGAGATGGGGTTTCTACATACTCGGTTTTTGGGCTATTTGATGGACATAATGGATCTGCAGCTGCTATATACTCAAAAGAGAATCTTCTAAACAATGTTTTAGCTGCTATTCCTCCAGAACTTAGCAGAGATGAGTGGGTAGCTGCCTTACCTAGGGCTTTGGTTGCAGGGTTTGTTAAGACAGATATAGATTTCCAAGAGAAAGCACGAACTTCAGGAACAACTGTTACCTTTGTTATAATAGAAGGATGGGTGGTAACTGTTGCTTCCGTTGGTGATTCACGGTGCATACTTGAATCTGCTGAAGGTGATATATACCATTTGTCAGCAGACCATAGACTTGAATGCAATGAAGAGGAGAGAGATCGTATCACTGCAAGTGGGGGTGAGGTCGGTCGACTGAATACAGGTGGTGGTGCAGAGATTGGTCCTTTGAGATGCTGGCCTGGTGGTTTGTGCCTTTCCCGATCCATTGGTGATATGGATGTTGGAGAGTTCATTGTTCCGGTTCCTTATGTAAAGCAAGTGAAGTTGTCTACTGCTGGTGGTAGGCTCATAATTTCAAGTGATGGTGTCTGGGATGCTTTATCACCTGAAATGGCTTTTGATTGTTGTCGTGGGATGCCGGCAGATGCAGCAGCTACTCAAGTTGTTAAGGAAGCTTTACATGTAAAGGGACTGCGAGATGATACAACTTCCATTGTGATTGATATACAACCACCAGAAAAGGTACCTGCTGCTCCTTTGCCACCACCAAAGAAGCAGGGAAAAGGGGTTTTCAAGTCCATGTTTCGCAAGAAGCCATCAGAGTCATCTTCTCATGTTGACAAAGAATATAGTGAACCAGATGTGGTGGAGGAGTTATTTGAGGAAGGATCTGCTATGCTTGCCGAAAGGCTAGATGCGAAATACCCGATATGCAACGTGTTTAAGTTGTTCATGTGTGCAGTTTGTCAAGTAGAGATGAAACCTGGAGAGGGTATATCTATACACGCTGGTTCATCTAATGCAGGAAAATTACGCCCCTGGGATGGCCCCTTCCTTTGCTCAAGTTGCCAGGAGAAGAAAGAAGCCATGGAAGGGAGAAGAGGAGATGGATCTAGATATAGTAGTGGAAGTGACTAG 1290 45.19 MSTRSEHQTVPLSVLLKRELASEKIEKPDIIHGQASQSKKGEDFTLLKTECQRVVGDGVSTYSVFGLFDGHNGSAAAIYSKENLLNNVLAAIPPELSRDEWVAALPRALVAGFVKTDIDFQEKARTSGTTVTFVIIEGWVVTVASVGDSRCILESAEGDIYHLSADHRLECNEEERDRITASGGEVGRLNTGGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSTAGGRLIISSDGVWDALSPEMAFDCCRGMPADAAATQVVKEALHVKGLRDDTTSIVIDIQPPEKVPAAPLPPPKKQGKGVFKSMFRKKPSESSSHVDKEYSEPDVVEELFEEGSAMLAERLDAKYPICNVFKLFMCAVCQVEMKPGEGISIHAGSSNAGKLRPWDGPFLCSSCQEKKEAMEGRRGDGSRYSSGSD* 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9012572 9022220 - Vvi18g780 Vvi18g780 780483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g780 429 Gene3D - 31 300 IPR036457 -
Vvi18g780 429 CDD PP2Cc 39 293 IPR001932 -
Vvi18g780 429 ProSiteProfiles PPM-type phosphatase domain profile. 24 293 IPR001932 -
Vvi18g780 429 SUPERFAMILY PP2C-like 38 295 IPR036457 -
Vvi18g780 429 Pfam Protein phosphatase 2C 53 277 IPR001932 -
Vvi18g780 429 SMART PP2C_4 21 291 IPR001932 -
Vvi18g780 429 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 2 422 - -
Vvi18g780 429 PANTHER ALPHABET, ISOFORM E-RELATED 2 422 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g780 - - vvi:100260807 813.142