Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g781 ATGGTGGCGGCGAAGCTAACATACGAGGAATGCCGTCGCAAGCGATTAGAGGAGAACAATAAAAGGCTTCAAGCCCTCAACCTTCCCCTCCTTTCTCAAGCTCTCCGAGAATCTCTCACCCCGAAGTCTTCCCCGGCGAAGAACTCTAAACCACGCAGAGTTCGCGAGCAACAGGTCCCACTGAGAAGGTCCAGTCGCGTTGCAAACAAGGCTTACCAGGCTCAAAAGGAAGGAAGGGATTTGTCCAACCGAGTATATGCTTCGGAGGAAGCTAGAACATGCGCCATGGAGAGAGCTGAAGAATTGCAGGCTAGTCTAGAACCCCAGTATCCTAGCTTCTTGAAGTCAATGCTCCAATCACATGTCACTGGTGGATTCTGGCTGGGCCTTCCTGTGCACTTTTGCAAGACGACCCTTCCAAAATCCGATGTGATAATGAATCTGGTGGGTGAAGAGGGTGATGAGTATCCGACAGTATTCTTGGCCCGGAAATCTGGACTTAGCGGTGGATGGAAAAGATTTTCTGTTGCTCATAAATTAGTAGATGGGGATGCATTGGTTTTCCAATTAGTCAGGCCTACAAAATTCAAGGTGATCATTGAACTGCACTGCAGACTAAGCACCTTCATTATCCCCACCATGGAGTACTTCTGA 654 48.78 MVAAKLTYEECRRKRLEENNKRLQALNLPLLSQALRESLTPKSSPAKNSKPRRVREQQVPLRRSSRVANKAYQAQKEGRDLSNRVYASEEARTCAMERAEELQASLEPQYPSFLKSMLQSHVTGGFWLGLPVHFCKTTLPKSDVIMNLVGEEGDEYPTVFLARKSGLSGGWKRFSVAHKLVDGDALVFQLVRPTKFKVIIELHCRLSTFIIPTMEYF* 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9025102 9026342 - Vvi18g781 Vvi18g781 780484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g781 217 Gene3D - 89 203 IPR015300 -
Vvi18g781 217 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 200 IPR044837 -
Vvi18g781 217 Coils Coil 6 26 - -
Vvi18g781 217 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 4 200 - -
Vvi18g781 217 SMART B3_2 113 207 IPR003340 GO:0003677
Vvi18g781 217 MobiDBLite consensus disorder prediction 38 68 - -
Vvi18g781 217 SUPERFAMILY DNA-binding pseudobarrel domain 106 200 IPR015300 -
Vvi18g781 217 CDD B3_DNA 111 200 IPR003340 GO:0003677
Vvi18g781 217 Pfam B3 DNA binding domain 113 201 IPR003340 GO:0003677
Vvi18g781 217 ProSiteProfiles B3 DNA-binding domain profile. 113 204 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g432 Vvi18g781 ECH
Vvi7g1082 Vvi18g781 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14360 PF02362 B3 1.20E-12 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g781 - - vvi:100248836 380.563