Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g80 ATGGACGAACCAACGGACAATCAGATCAAAAGGCCATCAAATTTTAACGAACGCGATGTCCTTTATCAACTCTCTGGTCTGTTACCAATCTGCTGTAACACTTCAATTTCCAAACCATTCACAGAGAATTCACCCAAGGAACAATTAAAAACTAGGGCAGTTGATGGGTTTTTATCGCCCGGAGAGAAACTACGAGGGGTTTTTATTCAGAGACTCAGGGGTAAAGCTGCAATTGAGCTTGCCCTAACTAATGTAGGAATCGATTTAACTATTGATATTGTTTCAGAAGTAATTAATAGAGGGAATTTAGGGGGTGAAGCAATGGTTATCTTTTTTAATTGGGCGGTTAAACAGCCCACAATACCTAAAGATGTAGATACTTACAATGTAATTATTAAAGCCCTGGGGAGAAGAAAGTTCATTGAATTTGTAGTGAAGGTGTTGAAGGATATGCATATTCAAGGAATAAGCCCTAATTATGAAACACTATCTATTGTGATGGATAGCTTTATTAAGGCTCGCCAGGTCTCCAAAGCAATTGAAATGTTCAGAAATTTAGAAGAGTTCGGAGGGAAATGTGATACGGAATCTTTGAATGTGCTTTTACAATGTCTATGTCAGCGATCCCATGTGGGTGCTGCAAATTTGTTCTTTAATGCAATGAAGGGTGGGATACCATTTAACTGTATGACATACAATATTATTATTGGTGGGTGGTCAAAATATGGAAAAATTGGTGAAATGGAGAGGTGTTTGAAAGCAATGGTAGCAGACGGGTTTAGTCCCAATTGTTTGACTTTCAGTCACCTTATTGAAGGTTTGGGAAGAGCTGGTAGGATTGATGACGCAGTTGAGGTTTTTCATCATATGGAAGAGACAGGCTGTGTGCCCAATGCTTGTGTTTACAATGCATTGATTTCTAATTTTATTTCTACCAGAGATTTTGATGAATGTTTGAAATATTATAATTTTATGGTGAGTAGCAACTGTGACCCAAATATGGATACTTATACCAAATTGATCGTCGCTTTTCTTAAAGCCCGAAAAGTGGCAGATGCACTTGAAATGCTTGATGAGATGGTAGGTCGAGGAATGATTCCAACTACAGGTGCTATAACCTCTTTTATTGAACCTTTGTGTCAATATGGTCCACCCCATGCTGCTATGATGATTTATAAGAAGGCAAGAAAAGTTGGATGTAGAATATCTCTCAGTGCTTATAAGCTATTGCTCATGCGACTTTCCAGATTTGGCAAATGTGGAATGTTGTTGAATTTGTGGGATGAGATGCAAGAAAGTGGTTATTCTTCTGATACAGAAGTTTATGAGTATGTCATTAATGGGCTCTGCAACATAGGACAGCTTGACACTGCCGTACTTGTCATGGAGGAGTCTTTGCATAAGGGTTTTTGCCCAAGTAGGCTTATTCGTAGCAAACTGAATAACAAACTACTGGCTTCAAATAAAGTAGAGATGGCTTACAAGCTTTTTTTGAAGATCAAAATTGCTCGTCAGAATGACAATGCACGAAGATTTTGGCGTGGTAATGGGTGGCATTTTTGA 1563 38.45 MDEPTDNQIKRPSNFNERDVLYQLSGLLPICCNTSISKPFTENSPKEQLKTRAVDGFLSPGEKLRGVFIQRLRGKAAIELALTNVGIDLTIDIVSEVINRGNLGGEAMVIFFNWAVKQPTIPKDVDTYNVIIKALGRRKFIEFVVKVLKDMHIQGISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCDTESLNVLLQCLCQRSHVGAANLFFNAMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMVADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRDFDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITSFIEPLCQYGPPHAAMMIYKKARKVGCRISLSAYKLLLMRLSRFGKCGMLLNLWDEMQESGYSSDTEVYEYVINGLCNIGQLDTAVLVMEESLHKGFCPSRLIRSKLNNKLLASNKVEMAYKLFLKIKIARQNDNARRFWRGNGWHF* 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 764517 766414 - Vvi18g80 Vvi18g80 779783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g80 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Vvi18g80 520 Gene3D Tetratricopeptide repeat domain 210 312 IPR011990 GO:0005515
Vvi18g80 520 Gene3D Tetratricopeptide repeat domain 414 506 IPR011990 GO:0005515
Vvi18g80 520 Gene3D Tetratricopeptide repeat domain 313 413 IPR011990 GO:0005515
Vvi18g80 520 Gene3D Tetratricopeptide repeat domain 88 209 IPR011990 GO:0005515
Vvi18g80 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Vvi18g80 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Vvi18g80 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Vvi18g80 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Vvi18g80 520 TIGRFAM PPR: pentatricopeptide repeat domain 231 264 IPR002885 -
Vvi18g80 520 TIGRFAM PPR: pentatricopeptide repeat domain 441 473 IPR002885 -
Vvi18g80 520 TIGRFAM PPR: pentatricopeptide repeat domain 127 159 IPR002885 -
Vvi18g80 520 TIGRFAM PPR: pentatricopeptide repeat domain 266 299 IPR002885 -
Vvi18g80 520 TIGRFAM PPR: pentatricopeptide repeat domain 301 333 IPR002885 -
Vvi18g80 520 TIGRFAM PPR: pentatricopeptide repeat domain 162 194 IPR002885 -
Vvi18g80 520 TIGRFAM PPR: pentatricopeptide repeat domain 336 368 IPR002885 -
Vvi18g80 520 Pfam Pentatricopeptide repeat domain 252 308 IPR002885 -
Vvi18g80 520 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 5 520 - -
Vvi18g80 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Vvi18g80 520 PANTHER OS02G0304800 PROTEIN 5 520 - -
Vvi18g80 520 Pfam PPR repeat 127 155 IPR002885 -
Vvi18g80 520 Pfam PPR repeat 406 434 IPR002885 -
Vvi18g80 520 Pfam PPR repeat 443 470 IPR002885 -
Vvi18g80 520 Pfam PPR repeat 336 364 IPR002885 -
Vvi18g80 520 Pfam PPR repeat 162 190 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g80 - - - qsu:111996365 764.222
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g80 . . . . . . . . . . . . . . . Cpe06g00015 . . . . . . . . . . . . . . . Cone4ag2026 . . . Lsi04g01817 Csa04g02714 . . . . . . . . . . . . Cmo09g00047 . . . Car09g00037 . . Bhi09g02856 . . . . . . . . . . . . . . . Chy07g00403 Cme07g00045
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006076 1 11 1 1 1 0 1 0 0 1 0 0 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 2 4 1 36