Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g801 ATGGAAGAAAAAAAATCAATCCACAAACCCTCGACTTATGGAAAGTTAATCACCATTCTCAGCATTGATGGAGGTGGAATACGAGGAATTATTCCAGGGACTATCCTCAGCTTCCCAGAGGCGGAGCTTCAGAAACTGGATGGTGAGGATGCAAGAATAGCAGACTATTTCGATGTGATCGCAGGGACAAGCACAGGTAGTCTCATCACTGCCATGCTTACTGCACCAAACATAAATAACCGCCCTTTGTTTGCAGCCATAGATATCCAGCACTTTTACCTTGAGCACTGCCCTAAAATATTCCCTCAGAACAGTTGTCCATTTGCTAACATTGCGGCAGTGATCAGAGCGCTACTAGGACCAAGATACAATGGCAAATATCTTCATAGCCTAGTGAGGGAAAAATTAGGAAACATCCGATTACACCAAACCTTGACTAAGGTTGTAATCCCAACATTTGACATCAAACTACTGCAGCCAACCATCTTCTCTAGCTTTAAGGTGAAACACGACCCAACCATAGATGCCTCACTCTCGGATATATGCATGGGAACTTCAGCTGCTCCAACTTATCTCCCAGCCCATCTTTTTGAAACCAAAGATTATGCCACTGAAAGGGCTAGAACATTCAATCTTATCTATGGTGGTGTAGCTGCTAACAATCCGGCTTTAATTGCTATGGGTGAAGTAACTAAAGAGCTTCCCATAGAAAGTGAAAAACATTACCTTCGAATCCAGGATGATACATTGAACCATGTATTATCTTCCGTTGATTATGCTACTAAGGATAATTTGTATAATCTGGTGAAAGTATCTGAAGGATTGTTGAAGAAACCAGTTTCAAGGGTGAACTTGGAAACTGGGAATTTGGAGCCTTCAAGTAAAGAGACAAATGAAGACGCTCTCATAAGGTTTGCAAATATACTGTCAAAAGAGAAGCGCCTTCGTGATGCCAAACCATGGATGGATTCCTCTTACCCAAAGTTCCCACACCGTCTTTTGGTCCATCTTCTTGCCAAGGCAAATGGCAGGATACTGTTAAATTTTGGATCATACGTTATTGTTCTCCTTGATGGTCATAGCCAACTGAGACCATATCCAAGAATCCAAATTCAAAGCCAACACACGTCATTGAAACAGAACCAGCAGAAAGAACTCCATAACTTTATATATGCCCATGACTAG 1185 41.77 MEEKKSIHKPSTYGKLITILSIDGGGIRGIIPGTILSFPEAELQKLDGEDARIADYFDVIAGTSTGSLITAMLTAPNINNRPLFAAIDIQHFYLEHCPKIFPQNSCPFANIAAVIRALLGPRYNGKYLHSLVREKLGNIRLHQTLTKVVIPTFDIKLLQPTIFSSFKVKHDPTIDASLSDICMGTSAAPTYLPAHLFETKDYATERARTFNLIYGGVAANNPALIAMGEVTKELPIESEKHYLRIQDDTLNHVLSSVDYATKDNLYNLVKVSEGLLKKPVSRVNLETGNLEPSSKETNEDALIRFANILSKEKRLRDAKPWMDSSYPKFPHRLLVHLLAKANGRILLNFGSYVIVLLDGHSQLRPYPRIQIQSQHTSLKQNQQKELHNFIYAHD* 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9246450 9251294 - Vvi18g801 Vvi18g801 780504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g801 394 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 20 227 IPR002641 GO:0006629
Vvi18g801 394 SUPERFAMILY FabD/lysophospholipase-like 16 287 IPR016035 -
Vvi18g801 394 Pfam Patatin-like phospholipase 20 227 IPR002641 GO:0006629
Vvi18g801 394 Gene3D Cytosolic phospholipase A2 catalytic domain 4 321 - -
Vvi18g801 394 PANTHER XYLOSE ISOMERASE 3 235 - -
Vvi18g801 394 PANTHER XYLOSE ISOMERASE 236 321 - -
Vvi18g801 394 PANTHER PATATIN 3 235 - -
Vvi18g801 394 PANTHER PATATIN 236 321 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g801 - - - egr:104451079 417.542
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g1090 Vvi18g801 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g801 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00834 . Bda08g01332 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01450 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000078 10 10 9 9 5 8 5 14 15 10 6 9 10 8 10 11 9 4 5 10 8 4 8 12 10 10 13 7 9 15 273