Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g81 ATGGGCTCTGCAACTCCTGCGACAAACCCTAAAAATGTATATCACATCGGAGGAATCGCAGTGGAGTTTCCATACCAACCGTACGGATCGCAGCTAGCGTTCATGGGGCGAGTCATCTCAACCCTAGATCGAGCCCAGAGAGACGGCCACTGTCACGCGTTGCTCGAGTCTCCGACCGGCACTGGAAAGTCACTTTCGCTTCTTTGCTCAGCGCTCGCTTGGCAAAAGAACTATCGGCCGAAGAATATGAACGGCGATGTTTCTAATTCGAAGCCTGATCCAGAGGCGTTGTCGGATCCGCTTGGACATGGCGGTGGATTTGTTCCAGAAACTGAGCCTTCGACACCAGAGAATTCAGAGCCAGCTTCGGCTGCGAATGGCAAAAATAAAAAGAAAAAGAGAAAGCCTACCATATTTTATGCATCGAGGACACACACACAAATCTCTCAAGTGATCCGTGAATACAGGAAAACAGCATATCGTGTGCCAATGGCAGTTTTGGCATCACGGAAACATTACTGCACAAACAGAAAAATAAATGCAAAAGCAAATATTGATGAAGAATGTAAGCTGCTTGTGAGGGACCAAGATTTTGGATGCCCAGAATTCAAAAATATGCATAAAGTCAAAGGTCATCCATCCCTTCAGAAAGGAGGCTGCCATGAGGCCCATGATATTGAAGATCTTGTGAAAGTTGGACAAGTTGTAAAAGGTTGTGCATATTATGCTGCACGAGATATGGCAGATAATGCACAATTAGTTTTCTGCCCATACAGCTACATCATTAATCCAGTCATTCGGGGAGCAATGGAGCTCGACATCGAAGGAGCCATTTTGATTCTTGATGAAGCCCACTCTGTTTTTGTGTTATATATGACAAGTCCAATAATGTCTGAGACAATTACCTTTAATATAGAGGACATGGCTCGTGATGCTGGTAGTGTGGATGTTGAAGAGGATGTTCTACATAAACTGCAGACAGAACTAGGGCAACTCTGTCCAGCTGATGCAATGATTTACCAACCTTTATATGAAATGACACAGGACATCATAAGTTGGATTGACCGGAAGAAAAATACCTTAGAAAAACGTGAATTCCAGCATTATTTCTCATGTTGGACTGGTGATAAGGCTTTAAGGGAGCTGCAAGAAGCTAATATTTCTCAGCAGAGCTTTCCAATCTTGCAAGAATGTGCCAGAAAGGCAATCAAAGCTGCTATAGATATAGAGTCAAGGGTAGCTCATTTGAGTGGCATGTCAGTGATTACACTGGAAGGGTTGTATTCTGCACTGAGTTACTTCTTTTCTGAAAATGGGCTTCACACTGTTGATTACCAGCTTGCTTTACAACGATATGTTAAAAAAGATGCTGGGCATCACTTATCTGTCAGATTACATTTAATCAAATTAATGCTAGTAGAATTTATCCAAAACTGGACATGTACTTTTAGTTTGTGGTGCTTGAATCCTGCTGTTGTCTTCCGAGGCATTGCTGATCTTTCTTTGTCAGTAATCCTGACATCTGGGACCCTTTCACCAATGCACTCATTTTCATCTGAACTTGGAGTTCAGTTTGGAACATGTCTGGAGGCTCCGCATGTAATAGATATTGAATCACAGCTGTGGGCTGCCATATTCTCCACTAGTCCAGGTAATTATCCGTTGAATGCAAGTTATAAAACAGCTGATGCATATGCGTTCCAGGATGCACTTGGAAAATCTTTGGAGGAAATTTTCAAGATCGTCCCGGGTCAATGGTCTCAACTAAATGAACAGAAATTTCTTTTTATTGAGCCAAGAGGAGGAAGTCAAGATGATTTTGAGCCTATTTTGAAGGCTTATTATGAGTCATCCCAAGATAATTCTAAGAAGAAAGGAGCTGCCTTTCTTGCAGTTTTCCGAGGAAAGGTTTCAGAAGGAATTGACTTTTCTGATGAAAATGCTCGAGCTGTTATCATCGTTGGCATACCCTTTCCAAACGTCCATGATATTCAAGTTGCACAGAAGAAGAAATACAACGACATGTATAAATCATCCAAAGATCTCTTGAGTGGGAATGAATGGTACTGCCACCAAGCCTTTCGAGCCCTAAATCAGGCTGCAGGCCGTTGCATACGACATAGGTTTGACTATGGTGGCATCATCTTATTAGCAGATGAGCGTTTTCGAGAAGATAGAAATACAGCATACATTTCAAAGTGGCTAAGGAAATCCATTAAACAGTATGAGAGCTTCGACATGTCACTAGAGAGATTAAAATCCTTTTTCATAGATGCCAAGGAACAGGTTGGAGACAAGGCTGTGAATGTATTACAGAGTGCTGAAACTAATGTGCAAGAAATCCTTTCTATGGATCAGATCATTGGGTCCACCAGAAAGAAAAATCAGAAGTTGAAAAAGCCTGACCATGGTGTACAAAAAGTAGTTTCAAACAATACAAGGTTTCAAAAATTGGTGCTAAAGGATGAGGAGGGTTTCAGCAGCTGCAAAGAATATATTGACCTAGAATGCAGTCCTCAGAAAGACTCAAGGTGTTCCAAGGCTACATCTCCAGCATCCTCCCATGACGGTCCAGAAGTATCCATTGTCAAAGAAACCCCTGGTGTGGATGGTAATATCACTCAAACTAGTCCGGTGTCCTTCTCCAAGGATGAAAACTCCAGTTCAACCATAATCCAGGCCTCTACTGACTTGCCAGACCAATCATTATTCCATTCAATGTCCTACACTAATTCTAGTGGACCTCCTTCCAGAGCCATGTGTTCATTGCTGGTCACTCCTGAAAGAGACTTCATTGCAAACACCTCTAACATGATGCCAGAAACAGAATCACCTTTGAATTTGAGTGTAAATTCCCATGCCCAGAAAAGAAGAAAGTCAATGATATTGCCATCAGTTAACCCTACCCAAGCAGAGCACTCAGATGCTCCTGATGCCAAAACACCTGGCCATATAGGAAACTCCATGGCAACTAGAGATGCAAATCGTAGAATTGAATTTGGTTTTGGTATGGACAAGCAACTACAAATTTTTTGCTCACTCTGCAGAAATCCATTGGGTCTTCCTGAGAACGATTTGTATGTTATGTGTTCATTAACTTCATCATCAAAAGTTCATTTGGCATCACTTCTGAGAGGAAGCTTAGAATCTTTAGCTGTCAATACATCAACAAGCATTCCTGTGGTGGTGTCTGACAGTTCATCAGTTAATCAGCGCCTCTGCAATAAAACCCTTGGAGGTGCTCAAGAACATGGTGTTTGGTGTGAAGAAGATGGGTGTGTTTTCAACACCATCTACTGCCCCTTCTGCAGTACACCCAACAATTGTCTTGGTGTGCAGATAATGGCCACTAATGCGTCAAATGTTGATTTACTTAACAAGGTATGGCTTTCATGTGATCTGCTAGTGCTCGGAAACTATCCTGCTAAATCTTATGACGATTATTTTAAATTTCTTTTGGCATACCTGCAGGATTTATCACCTCCTAGTGGCTCCAACAGTGATGAAGTTTCAGAACTGGATCCTTTTGAAAAATTTTCATACAAGCATCAAGAGCCTCAGCAGAACTCCAATGGCTGGAGGACTACAAAATCAAAGGTAGAATTTAAAATTGTCACTAGAGTAATGTTGAGCTTAATCTCATTTTTTGTGCTTTAG 3657 41.76 MGSATPATNPKNVYHIGGIAVEFPYQPYGSQLAFMGRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSALAWQKNYRPKNMNGDVSNSKPDPEALSDPLGHGGGFVPETEPSTPENSEPASAANGKNKKKKRKPTIFYASRTHTQISQVIREYRKTAYRVPMAVLASRKHYCTNRKINAKANIDEECKLLVRDQDFGCPEFKNMHKVKGHPSLQKGGCHEAHDIEDLVKVGQVVKGCAYYAARDMADNAQLVFCPYSYIINPVIRGAMELDIEGAILILDEAHSVFVLYMTSPIMSETITFNIEDMARDAGSVDVEEDVLHKLQTELGQLCPADAMIYQPLYEMTQDIISWIDRKKNTLEKREFQHYFSCWTGDKALRELQEANISQQSFPILQECARKAIKAAIDIESRVAHLSGMSVITLEGLYSALSYFFSENGLHTVDYQLALQRYVKKDAGHHLSVRLHLIKLMLVEFIQNWTCTFSLWCLNPAVVFRGIADLSLSVILTSGTLSPMHSFSSELGVQFGTCLEAPHVIDIESQLWAAIFSTSPGNYPLNASYKTADAYAFQDALGKSLEEIFKIVPGQWSQLNEQKFLFIEPRGGSQDDFEPILKAYYESSQDNSKKKGAAFLAVFRGKVSEGIDFSDENARAVIIVGIPFPNVHDIQVAQKKKYNDMYKSSKDLLSGNEWYCHQAFRALNQAAGRCIRHRFDYGGIILLADERFREDRNTAYISKWLRKSIKQYESFDMSLERLKSFFIDAKEQVGDKAVNVLQSAETNVQEILSMDQIIGSTRKKNQKLKKPDHGVQKVVSNNTRFQKLVLKDEEGFSSCKEYIDLECSPQKDSRCSKATSPASSHDGPEVSIVKETPGVDGNITQTSPVSFSKDENSSSTIIQASTDLPDQSLFHSMSYTNSSGPPSRAMCSLLVTPERDFIANTSNMMPETESPLNLSVNSHAQKRRKSMILPSVNPTQAEHSDAPDAKTPGHIGNSMATRDANRRIEFGFGMDKQLQIFCSLCRNPLGLPENDLYVMCSLTSSSKVHLASLLRGSLESLAVNTSTSIPVVVSDSSSVNQRLCNKTLGGAQEHGVWCEEDGCVFNTIYCPFCSTPNNCLGVQIMATNASNVDLLNKVWLSCDLLVLGNYPAKSYDDYFKFLLAYLQDLSPPSGSNSDEVSELDPFEKFSYKHQEPQQNSNGWRTTKSKVEFKIVTRVMLSLISFFVL* 1219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 767917 780317 + Vvi18g81 Vvi18g81 779784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g81 1218 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 17 372 IPR014013 GO:0005524
Vvi18g81 1218 Pfam Helicase C-terminal domain 578 737 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Vvi18g81 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 720 IPR027417 -
Vvi18g81 1218 SMART ultradead3 18 329 IPR014001 -
Vvi18g81 1218 Gene3D - 26 329 IPR027417 -
Vvi18g81 1218 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 9 1076 IPR045028 -
Vvi18g81 1218 MobiDBLite consensus disorder prediction 840 886 - -
Vvi18g81 1218 Pfam DEAD_2 140 287 IPR010614 GO:0003677|GO:0003678|GO:0005524
Vvi18g81 1218 SMART Cxpdneu3 561 724 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Vvi18g81 1218 Gene3D - 552 750 IPR027417 -
Vvi18g81 1218 PANTHER FANCONI ANEMIA GROUP J PROTEIN 9 1076 - -
Vvi18g81 1218 CDD SF2_C_XPD 539 722 - -
Vvi18g81 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 299 IPR027417 -
Vvi18g81 1218 MobiDBLite consensus disorder prediction 968 989 - -
Vvi18g81 1218 SMART deadxpd 19 337 IPR006554 GO:0003678|GO:0016818
Vvi18g81 1218 MobiDBLite consensus disorder prediction 842 856 - -
Vvi18g81 1218 MobiDBLite consensus disorder prediction 868 886 - -
Vvi18g81 1218 MobiDBLite consensus disorder prediction 83 137 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g81 K15362 BRIP1, BACH1, FANCJ; fanconi anemia group J protein [EC:5.6.2.3] - vvi:100251396 2154.79
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g81 . Blo12g00850 . Bda03g00325 . Bpe04g00285 Bma04g00292 . . . . Cma09g00046 . . . Cpe06g00016 . . . . . . . . . . . . . . . Cone4ag2025 . . . Lsi04g01816 Csa04g02713 . . . . . . . . . . Sed13g2203 . Cmo09g00048 . . . Car09g00038 . . Bhi09g02869 Tan01g5121 Cmetu07g0880 . Hepe01g2348 Mch11g0049 . Cla11g01831 Cam11g1898 Cec11g1923 Cco11g1933 Clacu11g2062 Cmu11g1867 Cre11g2275 . . Chy07g00402 Cme07g00047
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007710 1 2 1 1 1 0 1 0 0 2 1 1 1 2 2 1 0 1 1 1 2 1 1 2 1 1 1 1 1 1 32