Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g815 ATGATCATGAACTGGGGTAAAATAAGTTTAAAAGTAGTAGTCTCTGAAAAAATGGCGAATATTGCATTGAACATCTGGTTTTCTCTGTGTTGCTTGGTGGGATTGGTTCAGTGTTGTGGAGGCAGAGGATTCAATCCAATAGGAAAGCTCATAAGAGAGGGATTGTCGAAGGGTAGGTTGTCGGACGAATGGACGTGGACGAGTTTTCCATTGAATACAACCAGCAAGTTCCCTCTGGATGGGTTGAAAGAGAGCCATAAGATTGAAAGCTTGCCTGGACAACCCAATGGAGTGGACTTCGATCAGTTCTCAGGGTATGTTACGGTGGATTCTCTGGCAGGGCGTGCATTGTTCTATTATTTTGTGGAGTCACCTCAGAACTCGACTACTAAGCCCCTTGTGCTGTGGCTGAATGGAGGTCCTGGTTGTTCTTCATTTGGAATTGGAGCAATGATGGAACTGGGTCCATTTAGAGTCAACAAAGATGGAGAAACTCTATATCTAAATAAACATGCATGGAACAAAGAGGCCAACATCATCTTCCTTGAGTCCCCAGCCGGGGTGGGATTTTCTTACTCAGACACAGCATCCGATTATAATTCAAGCGGGGACTACAGGACTGCCTCAGATTCCTACATTTTTCTCCTTTCATGGCTGGAGATATTTCCTGAATACAAGACAAGGGATTTCTTCATTGCTGGAGAGGGCTATGCAGGTCATTATGTGCCCCAGCTTGCACAGACCATCCTTCTATTCAACAGTATTCCAGACCTACCTATAATCAATCTTAGAGGAATTGCCATGGGTAATCCATATGTGGATCGGGAAACGGCTTTTAAGGGAATTGTGGACTACTATTGGAGCCATGCTCTCATTTCAGATGAAATATACATGGAACTTATATTGAACTGCAATGTTTCTTCAGAAGAATCTGCATCAGAAGAGTGCATAGCATGGCTTCTTCAAGCAGATAACGCTATGGGCAACATCAATGTCTATGATATCTATGCCCCCTTGTGCAATTCTTCAGCGGACTCCAATTCTGTGAGTGCATTCGATCCCTGCTCGGGGAATTACATCCATGCTTACTTGAACATTCCTCAAGTTCAAGAAGCACTTCATGCAAACGTTACTGGTCTTCCATGTCCATGGGAATTCTGCAGGCAATGCCACCCAACCAAGTGCAACATTTATTCCAGCAACTATGCTGCCCAGCATTCAGGAGCTGATGAGCAGCGGAATACAAGTGTGGATATACAGGCAAGGGATCTGAACCAAAATGAATTTGAAGTGTTGTGGATTTTAACAAAGTCAAATTTAATTTGCAGTGGCGACACAGATGGTGTAGTACCCGTGACCTCTAGTAGGTATTTCATAAAGAAATTGGGCACATTAGTTAGGACCCCGTGGCACCCCTGGTACACCCATGGAGAGGTTGGTGGGTATGCTGTGGAATACCAAAACCTGACATTTGTGACTGTTAGAGGATCCGGGCATTTCGTCCCCAGTTATCAGCCGGCTCGATCACTGCAACTCTTCTGTTCATTCTTAAATGGAACGCTTGGAGCTTCATTACCACGACCCAACATGAAGGTTGCACCCTTAACATGGCTGTTGCCCCTCCTCCTCTGCTACCAACTGGCTTTGTTGCTCCCATACAGTGGCGCCACCGAAACTGAAAACCTTTATAGGCTGATAAACTCCCGGAGATCAGCAAATCCTCCTCGGTCAGAACTGTGGGATGAGTTAGATGGTAGGGATGGGAATGCTTCTCCCCTGTATATTGGACCCCAGGATGGGTTGATGCAAGATGACAAGATCGAGTCCTTGCCTGGACAGCCTGAAGGAGTGAATTTTGATCAGTATGCAGGCTACGTGACGGTGGATCCAAAGGCAGGAAGAGCACTGTTCTATTACTTTGTGGAATCACCCGAAGATTCTTCTACTAAGCCTCTGGTGTTGTGGCTCAATGGAGGGCCAGGATGTTCATCCCTTGGATATGGAGCCATGGAGGAATTGGGACCTTTCCGAGTCAACCCGGATGGAAAAACGCTTTTCCGGAATGAGTATGCATGGAACAACGTGTCAAATGTGATATTCTTGGAGTCCCCAGCCGGAGTGGGGTTTTCATATTCGAACACATCATCTGACTACGTCAATGTGGGTGACAAGAAGACGGCGGAGGACTCCTATACTTTTCTCATCAACTGGCTCGAGAGGTTCCCGCAGTATAAAACCCGGGATTTCTTCATAACCGGGGAGAGTTACTCCGGTCATTATGTACCTCAGCTTGCCTACACAATTCTCTCAAACAACAACAAAACTAATCAAACAGTCATCAACCTCAAAGGCATTGCGATTGGGAATGCTTGGATAGATGATAATACCAGCCTTAAGGGGATTTATGATTATATCTGGACGCATGCTTTGAGCTCGGACGAAAGTAACGCTGGCATTCAGAAATACTGTGACTTCACTACTGGAAATTTTTCAACCAAATGCCTAGACTACACATATCAAGCAGAAGGAGAGGTCGGAAATATTGATATTTACAACATATACGCTCCACTCTGTCATTCATCAGGACCGACTTCCCGCTCCGTGGGTTCTGTCAATGATTTTGATCCCTGCTCCGATTATTATGTGGAGTCCTATCTGAATCTGGCTGAAGTCCAAAAGGCTCTTCATGCAAGAAACACCACATGGGGAGCTTGCAGCGGAGTGGGATGGACAGACAGCCCAACGACCATTTTACCCACAATCAAGCAGCTGATGGCGAGTGGAATCAGCGTATGGATATACAGCGGCGACACTGATGGGCGTGTTCCAGTTACATCCTCTAGGTACTCTATAAACACCTTCAAACTTCCTGTCAAAACAGCCTGGCGGCCATGGTACTACAACAAGGAGGTTGGAGGATATGTTGTTGAGTACAAAGGGGTGGTTTTTGCTACAGTCAGGGGAGCTGGGCATCTAGTTCCAAGCTACCAACCTGGACGAGCTCTGACCATGATTGCTTCTTTCCTCCAGGGAACGCTTCCTCCTCCCTCTTGA 3054 46.17 MIMNWGKISLKVVVSEKMANIALNIWFSLCCLVGLVQCCGGRGFNPIGKLIREGLSKGRLSDEWTWTSFPLNTTSKFPLDGLKESHKIESLPGQPNGVDFDQFSGYVTVDSLAGRALFYYFVESPQNSTTKPLVLWLNGGPGCSSFGIGAMMELGPFRVNKDGETLYLNKHAWNKEANIIFLESPAGVGFSYSDTASDYNSSGDYRTASDSYIFLLSWLEIFPEYKTRDFFIAGEGYAGHYVPQLAQTILLFNSIPDLPIINLRGIAMGNPYVDRETAFKGIVDYYWSHALISDEIYMELILNCNVSSEESASEECIAWLLQADNAMGNINVYDIYAPLCNSSADSNSVSAFDPCSGNYIHAYLNIPQVQEALHANVTGLPCPWEFCRQCHPTKCNIYSSNYAAQHSGADEQRNTSVDIQARDLNQNEFEVLWILTKSNLICSGDTDGVVPVTSSRYFIKKLGTLVRTPWHPWYTHGEVGGYAVEYQNLTFVTVRGSGHFVPSYQPARSLQLFCSFLNGTLGASLPRPNMKVAPLTWLLPLLLCYQLALLLPYSGATETENLYRLINSRRSANPPRSELWDELDGRDGNASPLYIGPQDGLMQDDKIESLPGQPEGVNFDQYAGYVTVDPKAGRALFYYFVESPEDSSTKPLVLWLNGGPGCSSLGYGAMEELGPFRVNPDGKTLFRNEYAWNNVSNVIFLESPAGVGFSYSNTSSDYVNVGDKKTAEDSYTFLINWLERFPQYKTRDFFITGESYSGHYVPQLAYTILSNNNKTNQTVINLKGIAIGNAWIDDNTSLKGIYDYIWTHALSSDESNAGIQKYCDFTTGNFSTKCLDYTYQAEGEVGNIDIYNIYAPLCHSSGPTSRSVGSVNDFDPCSDYYVESYLNLAEVQKALHARNTTWGACSGVGWTDSPTTILPTIKQLMASGISVWIYSGDTDGRVPVTSSRYSINTFKLPVKTAWRPWYYNKEVGGYVVEYKGVVFATVRGAGHLVPSYQPGRALTMIASFLQGTLPPPS* 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9420170 9429185 - Vvi18g815 Vvi18g815 780518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g815 1017 PRINTS Carboxypeptidase C serine protease (S10) family signature 688 700 IPR001563 GO:0004185|GO:0006508
Vvi18g815 1017 PRINTS Carboxypeptidase C serine protease (S10) family signature 701 711 IPR001563 GO:0004185|GO:0006508
Vvi18g815 1017 PRINTS Carboxypeptidase C serine protease (S10) family signature 737 762 IPR001563 GO:0004185|GO:0006508
Vvi18g815 1017 PRINTS Carboxypeptidase C serine protease (S10) family signature 981 994 IPR001563 GO:0004185|GO:0006508
Vvi18g815 1017 ProSitePatterns Serine carboxypeptidases, histidine active site. 489 506 IPR033124 GO:0004185
Vvi18g815 1017 ProSitePatterns Serine carboxypeptidases, histidine active site. 981 998 IPR033124 GO:0004185
Vvi18g815 1017 Gene3D - 917 1011 - -
Vvi18g815 1017 Gene3D - 429 519 - -
Vvi18g815 1017 Gene3D - 877 908 - -
Vvi18g815 1017 Gene3D - 355 390 - -
Vvi18g815 1017 PANTHER CARBOXYPEPTIDASE 76 520 - -
Vvi18g815 1017 PANTHER CARBOXYPEPTIDASE 564 1012 - -
Vvi18g815 1017 SUPERFAMILY alpha/beta-Hydrolases 607 1012 IPR029058 -
Vvi18g815 1017 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 564 1012 IPR001563 GO:0004185|GO:0006508
Vvi18g815 1017 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 76 520 IPR001563 GO:0004185|GO:0006508
Vvi18g815 1017 SUPERFAMILY alpha/beta-Hydrolases 88 520 IPR029058 -
Vvi18g815 1017 Pfam Serine carboxypeptidase 611 1011 IPR001563 GO:0004185|GO:0006508
Vvi18g815 1017 Pfam Serine carboxypeptidase 92 519 IPR001563 GO:0004185|GO:0006508
Vvi18g815 1017 Gene3D alpha/beta hydrolase 601 867 IPR029058 -
Vvi18g815 1017 Gene3D alpha/beta hydrolase 81 352 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g815 - - K16297 pvy:116131911 1181.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g449 Vvi18g815 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g815 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00575 . . . . Bda01g01384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017874 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 3 6