Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g82 ATGATGGAGTGGGAAGCCCAAGAACTCCAGCAGCAGCCGCAGCATCACAATCAGAATCAGAATGGGGTTGTTGTTGGAGGAGGGAGTGGAGGGTTGTACGTGAAGGTGATGACTGATGAGCAAATGGAGCTGCTGAGGCGCCAGATCTCAGTCTACGCCACCATTTGTGAGCAGCTTGTTGAGATGCACAAGGCCATTACTACACAACAGGACCTCGCTGGGATGAGGCTGGGGAATATATACTGTGATCCATTGATGGCATCCGCTGGTCACAAGATCAGTAGCAGGCAGCGGTGGACTCCCACGCCTGTGCAGCTTCAAATTCTTGAGCGAATCTTTGATCAAGGCAATGGGACTCCAAGCAAGCAGAAGATTAAAGAGATAACCACTGAACTGACACAACATGGCCAAATTTCTGAAACCAACGTCTACAATTGGTTCCAGAACAGGAGGGCTCGGTCAAAGAGAAAGCAGTCAGTTCCATTACCGAATAATGCTGATTCAGAAGTAGAGACAGATGTCGAGTCCCCAAAAGAGAAGAAGACAAAACCTGATAATATCCAGTCCCATGAGAACTCAGCTCTGGGGACTGAAAATATATACTTCCAGAGTCCGGAAATGGGAAGTGAAATGCATTGCTTGGATACACAGCCTAACAAAGGGGAGCCCATGTTTCCATCTGATCGCAGTTTAAGATCTTCTGGCAGCTTGGGGCATTCATCTTTGTACGAAACCGGGGTTCCAAATCCAAGAATGGACCAGTTGATCGGTAAAGTGGAAGTTCCTGGTAGCTTTAGTCCTTATCGGCAGGGAGGGGAAGGGTTTGACATGGTTGGATGA 840 48.21 MMEWEAQELQQQPQHHNQNQNGVVVGGGSGGLYVKVMTDEQMELLRRQISVYATICEQLVEMHKAITTQQDLAGMRLGNIYCDPLMASAGHKISSRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITTELTQHGQISETNVYNWFQNRRARSKRKQSVPLPNNADSEVETDVESPKEKKTKPDNIQSHENSALGTENIYFQSPEMGSEMHCLDTQPNKGEPMFPSDRSLRSSGSLGHSSLYETGVPNPRMDQLIGKVEVPGSFSPYRQGGEGFDMVG* 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 780747 784482 - Vvi18g82 Vvi18g82 779785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g82 279 ProSiteProfiles 'Homeobox' domain profile. 92 157 IPR001356 GO:0003677
Vvi18g82 279 PANTHER - 2 279 - -
Vvi18g82 279 MobiDBLite consensus disorder prediction 153 197 - -
Vvi18g82 279 MobiDBLite consensus disorder prediction 171 187 - -
Vvi18g82 279 MobiDBLite consensus disorder prediction 210 250 - -
Vvi18g82 279 Gene3D - 98 160 - -
Vvi18g82 279 CDD homeodomain 96 158 IPR001356 GO:0003677
Vvi18g82 279 SMART HOX_1 94 161 IPR001356 GO:0003677
Vvi18g82 279 SUPERFAMILY Homeodomain-like 95 159 IPR009057 -
Vvi18g82 279 MobiDBLite consensus disorder prediction 7 22 - -
Vvi18g82 279 Pfam Homeodomain 96 156 IPR001356 GO:0003677
Vvi18g82 279 MobiDBLite consensus disorder prediction 1 22 - -
Vvi18g82 279 MobiDBLite consensus disorder prediction 229 243 - -
Vvi18g82 279 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 279 IPR044559 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g1199 Vvi18g82 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14361 PF00046 Homeodomain 2.60E-18 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g82 - - vvi:100251229 514.612