Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g828 ATGAAAAGTCAATGGCAGAAAGGGAAACTTATTGGACGGGGCACATTTGGAAGTGTGTATGTTGCAACAAATCGAGAAACTGGAGCTTTATGTGCAATGAAGGAAGTTGATATCATTCCAGATGACCCTAAATCTAGTGAGTGTATCAAACAGTTGGAGCAGGAAATTAAAGTTCTCCATCATTTAAAGCATCCAAATATTGTGCAGTACTATGGCAGTGAAATTGTTGATGATCATTTTTACATATATTTGGAATATGTTCATCCTGGATCCATAAATAAATATGTTGATCATTTTGGAGCTATGACAGAAAATGTAGTTCGAAATTTCACCCGCCATATTCTCTCTGGGTTGGCTTACTTGCACAGCACAAAGACAATCCACAGGGATATCAAAGGGGCAAATTTACTCGTTGACTCATTTGGTGTTGTTAAGCTTGCAGACTTTGGGTTGGCAAAATTTCTTACAGGACAAGCATGTGATCTTTCACTGAAGGGCAGTCCACACTGGATGGCTCCAGAGGTCATGCAAGCTGTGCTGCGGAAAGATGCCAATCCTGATCTTGCTTTTGCGGTGGACATATGGAGCTTGGGTTGTACCATCATTGAGATGCTGAATGGAAGACCTCCTTGGAGTGAGTTTGCTGCGCCTGCAGCAATGTTCAAAGTTTTGCATGAGAGCCCACCCTTACCAGAAACATTGTCTTCAGAGGGAAAGGATTTCCTCCAGCATTGCTTTCGAAGAAATCCTGCAGAACGGCCATCAGCTGCTATGCTGCTTGATCATTCTTTTGTAAGAAGTTCACAAGATCAAAATGTTTCAGGCTTCAGCCAGGCATTTTCAGGAATGCAGTTAGTGGACAAACCACGCAGTCCAGGAGATGCCATGAAACATAAAATTCATTCCATGCCACTCTCTTCAGGCACACAAACCATGAACAGAAATGTACTAAGGGAAACTTCTCATTTCACACTGAAAGTCCTCCCTAATCTATCTCCATTGCTGAATCACACTTCCCATATTCCCATGACGTGCAGCTTGGAGAACAGAAATCACTGTGCGGGTCTGAAAACACGTGGAAGGGATTTGCATCCCCTCTGA 1101 42.78 MKSQWQKGKLIGRGTFGSVYVATNRETGALCAMKEVDIIPDDPKSSECIKQLEQEIKVLHHLKHPNIVQYYGSEIVDDHFYIYLEYVHPGSINKYVDHFGAMTENVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSFGVVKLADFGLAKFLTGQACDLSLKGSPHWMAPEVMQAVLRKDANPDLAFAVDIWSLGCTIIEMLNGRPPWSEFAAPAAMFKVLHESPPLPETLSSEGKDFLQHCFRRNPAERPSAAMLLDHSFVRSSQDQNVSGFSQAFSGMQLVDKPRSPGDAMKHKIHSMPLSSGTQTMNRNVLRETSHFTLKVLPNLSPLLNHTSHIPMTCSLENRNHCAGLKTRGRDLHPL* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9549008 9561275 + Vvi18g828 Vvi18g828 780531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g828 366 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Vvi18g828 366 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 325 - -
Vvi18g828 366 SUPERFAMILY Protein kinase-like (PK-like) 3 335 IPR011009 -
Vvi18g828 366 SMART serkin_6 5 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g828 366 ProSiteProfiles Protein kinase domain profile. 5 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g828 366 Pfam Protein kinase domain 6 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g828 366 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 325 - -
Vvi18g828 366 PIRSF TyrPK_CSF1-R 2 104 - -
Vvi18g828 366 PIRSF TyrPK_CSF1-R 97 324 - -
Vvi18g828 366 Gene3D Transferase(Phosphotransferase) domain 1 2 292 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76395 PF00069 Pkinase 7.80E-68 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g828 - - vvi:100257467 753.436