Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g831 ATGGATTTGAAGAGGAAAAGAAGAGCAATGTGCTTCACGTTCTCCGCTCTGGAGTGGGCCATTATTGGAACAAAGCCCAAAGAACTTTCCCAAAATGGTCCACCACACAAAATCCTAAAGGCAAAGGGAAAAGCCCGAGGGGGCCCAAATCCTGATTACCTGCCAGGCAAGTTCAAAACAAAGTGCATCGGCAACCAAAACGACGTTGCTTTAGGCATCGCAAAGCACGTAGCCTTGACCGAAAGCAAGGACTCGAACCTAGTTTTATCGCCGCTGTCGATTCATGTGGTTCTGAGCTTGGTAGCAGCTGGCTCCAAGGGCGCAACGCTAGACCAGTTGCTCTCCTTTCTCAAATCCAAAGCCTCCGGCGATCTCAACGCCTTCGCTTCTGAGCTGGTTTCCCTAGTCTTTGCCGATGGTAGTCCTAGCGGTGGCCCTTGTTTGTCCTTCGCCAACGGTGTCTGGATCGATAAAACACTTCCTCTTAAACCCTCTTTCAAACAGATCGTCGACACCGCTTATAAGGCTGCTGTTCATCAAGCTGATTTCCGGATCAAGGCTGCTGAGGTAACCAGTGAAGCGAATTCATGGGCTGAAAAGGAGACCAATGGCCTTATCAAAGAAGTTCTTCCTCCTGGCTCAGTTGACTCTTCAACCAGGCTCATCTTTGCAAATGCTCTCTATTTTAAAGGGGCTTGGAATGAGAAGTTTGATGCATCAGCAACAAAAGATTATGACTTCCATCTTCTCAATGGGAGCTCGGTTCAAGTGCCCTTCATGACCAGCAAGAAGAAGCAACTTATTAGCACCTTTGATGATTTCAAAGTCTTAGGGCTTTCTTATAAACAAGCTTCCAAAGTCTTAAAGGGACTAGGTCTGGACCTATATGTCTCAAGCATTTTCCATAAATCCTTCATTGAAGTTAATGAGGAAGGCACAGAAGCTGCAGCTGCTTCTGTAGGTGTTGTGAAACTGAGGGGCATGCTTAGTACTGATAATATAGATTTCATAGCTGATCACCCGTTCCTGTTTGTGATCCGAGAAGACATGACTGGAGTTGTGCTGTTCATTGGGCATGTACTCAATCCTCTCGCAGTGCTAATAGCTCTAGCTTTACCCGTAAACTCCTGA 1131 46.6 MDLKRKRRAMCFTFSALEWAIIGTKPKELSQNGPPHKILKAKGKARGGPNPDYLPGKFKTKCIGNQNDVALGIAKHVALTESKDSNLVLSPLSIHVVLSLVAAGSKGATLDQLLSFLKSKASGDLNAFASELVSLVFADGSPSGGPCLSFANGVWIDKTLPLKPSFKQIVDTAYKAAVHQADFRIKAAEVTSEANSWAEKETNGLIKEVLPPGSVDSSTRLIFANALYFKGAWNEKFDASATKDYDFHLLNGSSVQVPFMTSKKKQLISTFDDFKVLGLSYKQASKVLKGLGLDLYVSSIFHKSFIEVNEEGTEAAAASVGVVKLRGMLSTDNIDFIADHPFLFVIREDMTGVVLFIGHVLNPLAVLIALALPVNS* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9581905 9589816 - Vvi18g831 Vvi18g831 780534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g831 376 Pfam Serpin (serine protease inhibitor) 294 363 IPR023796 -
Vvi18g831 376 Pfam Serpin (serine protease inhibitor) 66 284 IPR023796 -
Vvi18g831 376 PANTHER SERPIN-ZX-LIKE 291 365 - -
Vvi18g831 376 Gene3D - 231 288 IPR042185 -
Vvi18g831 376 SMART serpin2 71 363 IPR023796 -
Vvi18g831 376 PANTHER SERINE PROTEASE INHIBITOR, SERPIN 291 365 IPR000215 GO:0004867|GO:0005615
Vvi18g831 376 PANTHER SERPIN-ZX-LIKE 64 288 - -
Vvi18g831 376 Gene3D Antithrombin, subunit I, domain 2 58 230 IPR042178 -
Vvi18g831 376 Gene3D Serpins superfamily 332 365 - -
Vvi18g831 376 SUPERFAMILY Serpins 61 363 IPR036186 -
Vvi18g831 376 PANTHER SERINE PROTEASE INHIBITOR, SERPIN 64 288 IPR000215 GO:0004867|GO:0005615
Vvi18g831 376 Gene3D - 289 328 - -
Vvi18g831 376 CDD serpinP_plants 65 363 - -
Vvi18g831 376 ProSitePatterns Serpins signature. 336 346 IPR023795 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g831 K13963 SERPINB; serpin B - vvi:100266122 436.802
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g831 . . . . . . . . Cmo05g00215 . . . . . Sed08g1817 . . Bhi04g00301 Tan02g1904 Cmetu03g1500 . Hepe10g0696 . Lcy13g2026 Cla08g01534 Cam08g2027 Cec08g1603 Cco08g1738 Clacu08g1716 . Cre08g1499 . . Cone17ag1302 . . Csa04g02371 . Cme03g02000 Blo17g00830 . Bda08g01319 . . Bpe05g00068 . . . . . . Cma05g00209 . . Cpe11g00174 . . . . . . . . . . . . . . . Lsi08g01436 Csa02g02005 Chy07g00100 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000825 2 1 6 2 1 2 0 2 2 4 1 2 3 4 4 7 2 3 2 2 4 1 2 5 5 4 4 7 5 1 90