Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g838 ATGAAGAACTCCAAGCGGCCTCATTTCTTTGAGGTTTTCCAGCCTGACGCGAGCTCCGAGCGACTGAAAATTCCATCAAGATTCATCAAACACATGGAAGGCAGAACATCTGGATTTGTTTCATTAGTGGGCCCTAGTGATAACACTTGGCATGTTGACTTGATTCAGCAGAATAGTGACTTATTATTGCATGATGGATGGCCAGTATTTGTGAGAGATCACTGCATAGAATGTGGTGACTCTTTGGTATTTAGATATGATGGCAATTTGCATTTCACAGTGCAAGTTTTTGATCGAAGTTCATGTGAGAAAGAAGCTGCATTTCATGCTAAATGCAGCCAAGATCCAGGAGGTTTGGATGATCCGCTAAGAAAAAAAAGAGAAAGGGAGAGCCCAGTTGTCTCTAAAGATAAAATTTTTGAAGGTGTGCCAAAGAAAATGAGAGGGAGCTCTTGTCATGTGCATTCAGAATGCATAACTAAGAACTTGGAAGACAAGATGGATAAATCTGATAAGGAAGCATGCAAGTGTGAAGATTTATTTATGACCGAAAAATGTCAAGCAGCAGTTTTCTCCAATGAAACAAAGAAATGCGGGAGTCCATCAAAGGATTCCCTCAGTTCTATGCCTTCTCAATTAAAAGCTTGCAATGAAAAACCAGAGGCTGCCATCCAGAGCAGAGCAGATGATGAATTCGATTCTCGTGCTAGAGGTTGTGGTTGCACTTCTCTGTTGTCAACATTTGAAGAGAAAAAAGTAGCTCAGTCTTTTACTTCCTCTTTTCCTAATTTTGTGAGGATCATGAAAAAGTTCAACATCAGTGGTTCATATACTCTGAAAATCCCATATAAGTTCTCAATGGAACATCTTCCCAAGTGCAAAATAAAGATTGTCCTTCGTAATCTAAAAGGAGATTGTTGGACTGTGAATTCAGTCCCAACTACAAAGGTTCACACTCTTCATACCTTCTGTGGAGGGTGGATGGCTTTCGTCCGTGGTAATGGCCTCAAGATGGGAGATATTTGCATTTTTGAACTTGTGCGCAAGTGTGAAATGCGTGTTCACATTCTTGGGGCTGGAAAGGAAGGTATAGATGGCCAAAGTGGGAAAACTATGTCTAATGGGTTTACTCCAGGGTGTGCTGCCACTTCACATAAAAATCCTGAAGGTTTACCAAAGAAACCAAAAGGGAACTCTTCAAAGGTCCATTTAAAACATATAACCAAGCTGGGTGTATCTGGTAAGAAAGGGTCTAAAACACATCAAGATACTGTTCCTAATGAAATGAAAAAACATGGTAGTTCATCAAAGAGCTCTGTCAGTTCTGCATCAAAAGCTTGCAATGAAAAGCCTGAGTCAGCCATCCAGAACACAACCAGTGCAGCAGATGATCTAAGATCACAAGCTAAAAGTTTTGTCTCAACAATATCAGCTGAAGAAGAAAAAGCAGTGCGTTCTTTTACTTCTAGTTATCCTTATTTTGCGAGGTTCATGAAGAAGTTCAATATCAGTGGTTCATATACTCTAAAAATTCCATATCAATTTTCAATGGCACATCTTCCAAAATGCAAGACGGAGATTGTTCTTCGTAACTTAAAAGGAGAATGTTGGACTGTAAATTCAGTCCCAGATACAAAGGGGCGAATGGTGCATACTTTCTGTGGAGGGTGGATGGCCTTTGTTCGTGGCAATGATGTCAAGATGGGAGATATCTGCATGTTCGAACTTGTTGGCAAAAGTGAAATGCTTGTACATATATCTGGGGTTGGAAAGAAAGGGTCAGATCATCAGAGTGGAAAAGCAGCTTCTAACTAA 1815 40.22 MKNSKRPHFFEVFQPDASSERLKIPSRFIKHMEGRTSGFVSLVGPSDNTWHVDLIQQNSDLLLHDGWPVFVRDHCIECGDSLVFRYDGNLHFTVQVFDRSSCEKEAAFHAKCSQDPGGLDDPLRKKRERESPVVSKDKIFEGVPKKMRGSSCHVHSECITKNLEDKMDKSDKEACKCEDLFMTEKCQAAVFSNETKKCGSPSKDSLSSMPSQLKACNEKPEAAIQSRADDEFDSRARGCGCTSLLSTFEEKKVAQSFTSSFPNFVRIMKKFNISGSYTLKIPYKFSMEHLPKCKIKIVLRNLKGDCWTVNSVPTTKVHTLHTFCGGWMAFVRGNGLKMGDICIFELVRKCEMRVHILGAGKEGIDGQSGKTMSNGFTPGCAATSHKNPEGLPKKPKGNSSKVHLKHITKLGVSGKKGSKTHQDTVPNEMKKHGSSSKSSVSSASKACNEKPESAIQNTTSAADDLRSQAKSFVSTISAEEEKAVRSFTSSYPYFARFMKKFNISGSYTLKIPYQFSMAHLPKCKTEIVLRNLKGECWTVNSVPDTKGRMVHTFCGGWMAFVRGNDVKMGDICMFELVGKSEMLVHISGVGKKGSDHQSGKAASN* 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9669873 9677462 + Vvi18g838 Vvi18g838 780541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g838 604 MobiDBLite consensus disorder prediction 113 132 - -
Vvi18g838 604 SMART B3_2 497 590 IPR003340 GO:0003677
Vvi18g838 604 SMART B3_2 264 360 IPR003340 GO:0003677
Vvi18g838 604 SMART B3_2 9 100 IPR003340 GO:0003677
Vvi18g838 604 Gene3D - 1 102 IPR015300 -
Vvi18g838 604 SUPERFAMILY DNA-binding pseudobarrel domain 3 102 IPR015300 -
Vvi18g838 604 CDD B3_DNA 492 586 IPR003340 GO:0003677
Vvi18g838 604 MobiDBLite consensus disorder prediction 398 412 - -
Vvi18g838 604 ProSiteProfiles B3 DNA-binding domain profile. 264 360 IPR003340 GO:0003677
Vvi18g838 604 CDD B3_DNA 262 357 IPR003340 GO:0003677
Vvi18g838 604 Pfam B3 DNA binding domain 504 586 IPR003340 GO:0003677
Vvi18g838 604 Pfam B3 DNA binding domain 267 357 IPR003340 GO:0003677
Vvi18g838 604 Pfam B3 DNA binding domain 10 99 IPR003340 GO:0003677
Vvi18g838 604 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 1 375 IPR044837 -
Vvi18g838 604 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 392 603 IPR044837 -
Vvi18g838 604 SUPERFAMILY DNA-binding pseudobarrel domain 257 359 IPR015300 -
Vvi18g838 604 MobiDBLite consensus disorder prediction 375 462 - -
Vvi18g838 604 Gene3D - 459 589 IPR015300 -
Vvi18g838 604 Gene3D - 247 359 IPR015300 -
Vvi18g838 604 ProSiteProfiles B3 DNA-binding domain profile. 7 100 IPR003340 GO:0003677
Vvi18g838 604 SUPERFAMILY DNA-binding pseudobarrel domain 487 588 IPR015300 -
Vvi18g838 604 MobiDBLite consensus disorder prediction 118 132 - -
Vvi18g838 604 CDD B3_DNA 7 98 IPR003340 GO:0003677
Vvi18g838 604 MobiDBLite consensus disorder prediction 431 462 - -
Vvi18g838 604 ProSiteProfiles B3 DNA-binding domain profile. 494 590 IPR003340 GO:0003677
Vvi18g838 604 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 392 603 - -
Vvi18g838 604 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 1 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g838 - - - vvi:100253936 1219.53
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g838 . Blo12g00937 . Bda03g00232 . Bpe04g00197 Bma04g00184 . . . Cma01g01876 Cma09g00197 Car01g01462 Car12g00479 . Cpe06g00134 Cpe07g00453 . . . . . . . . . . . . . . Cone4ag1546 Cone7ag1405 . . Lsi04g01605 Csa03g04152 Chy04g00568 . . . . . . . . . . Cmo01g01934 Cmo09g00192 Cma12g00508 . . Car09g00166 . Cpe02g00152 Bhi09g02026 . . . . . . Cla05g01994 Cam05g2144 Cec05g2160 Cco05g2207 Clacu05g2135 Cmu05g2008 Cre05g2133 . Csa02g02009 . Cme04g00679
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006500 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 0 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14363 PF02362 B3 1.60E-12 CL0405 Vvi TF