Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g841 ATGTTCTTTAGCTCAAACCCTATAATGGGAACCACATCACCCTTGCCTGATCTCTCCTTGCAGATCAGCCCCCCATCCATTTCAGATTGTGAGCCCATGTTGAGCTTAGGTTTAGAGATGGCAGCTCTAAATCCTCCACCCCTAGAACTACCAAGAAACCTTCATCATAACCACCACAACCACCAACCTCAAATCTACGGGCGTGAGTTCAAGAGAAATTCAAGAATGATGAATGGCAGCAAAAGAAGCATCAGAGCTCCTAGAATGAGATGGACTACAACCCTCCATGCCCATTTCGTCCATGCAGTCCAGCTTCTTGGCGGCCATGAGAGAGCAACACCAAAATCAGTCTTAGAGTTGATGAATGTGAAAGATCTAACTTTAGCTCACGTGAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGGAACAGGTCAAGGGCAAACAGATATGGGTTTGAACCAAAGGACAGGGATCGGTCAAGTGGAGCTAGGAGGATTATCTTGTGATAAAGCTGATGCCACCCCTTCTTTTTCTTCCAATACACCTCAACCTTCAACACCGCAAAAAATCTCACGATCTTCGTGGTCATTATCAATGGAGACAAACGATGAAGGCCGCCTCAGTCATGAAAATGGGCTAAAATATTCTCATCTCATGGCAAATGACACCAAGATGGAAGGACATAAGGTTGCCCTCCATGTGGCTGAAGGACCAAAAGAGAGGGTGGATTCTAGCGCCTTGTCACCTTCGGATATGTTGCTTAATCTCGAGTTCACCCTTGGAAGACCAAGTTGGCAAATAGACTACGCGGATCAATCTCCGAATGAGCTAGCTCTTCTCAAGTGTTAA 864 45.6 MFFSSNPIMGTTSPLPDLSLQISPPSISDCEPMLSLGLEMAALNPPPLELPRNLHHNHHNHQPQIYGREFKRNSRMMNGSKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGTGQGQTDMGLNQRTGIGQVELGGLSCDKADATPSFSSNTPQPSTPQKISRSSWSLSMETNDEGRLSHENGLKYSHLMANDTKMEGHKVALHVAEGPKERVDSSALSPSDMLLNLEFTLGRPSWQIDYADQSPNELALLKC* 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9692028 9695345 + Vvi18g841 Vvi18g841 780544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g841 287 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 13 281 - -
Vvi18g841 287 MobiDBLite consensus disorder prediction 177 207 - -
Vvi18g841 287 SUPERFAMILY Homeodomain-like 84 141 IPR009057 -
Vvi18g841 287 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 87 140 IPR006447 GO:0003677
Vvi18g841 287 MobiDBLite consensus disorder prediction 174 211 - -
Vvi18g841 287 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 13 281 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vvi18g841 287 Pfam Myb-like DNA-binding domain 88 139 IPR001005 -
Vvi18g841 287 Gene3D - 86 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g841 - - - vvi:100259077 517.309
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g841 . Blo12g00936 . . . . . . Cmo05g00220 Cmo12g00449 . Cma09g00194 . Car12g00477 Sed01g2622 Cpe06g00132 Cpe07g00452 Bhi04g00296 Tan02g1912 Cmetu04g2692 . Hepe10g0690 . Lcy13g2020 Cla08g01528 Cam08g2020 Cec08g1594 Cco08g1731 Clacu08g1709 . Cre08g1490 Cone4ag1544 Cone7ag1407 Cone17ag1309 Cone20ag0163 Lsi04g01607 Csa03g04154 Chy04g00565 Cme03g01993 . Blo18g00828 . Bda01g01484 Bpe02g01679 . Bma01g00775 . . . Cmo09g00190 Cma12g00506 Cma05g00213 Car05g00175 Car09g00164 Cpe11g00176 Cpe02g00150 Bhi09g02029 . . . . Mch11g0241 . Cla05g01991 Cam05g2142 Cec05g2157 Cco05g2205 Clacu05g2133 Cmu05g2006 Cre05g2130 Lsi08g01429 Csa02g02010 Chy03g01499 Cme04g00674
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi5g894 . 1 213 G2-like Transcription Factor Family AT3G24120 74.4 4.5e-80 295.0
Vvi8g1362 ECH 28 214 G2-like Transcription Factor Family AT3G24120 54.4 6.8e-44 174.9
Vvi19g1171 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 7.1e-41 164.9
Vvi3g1096 . 12 167 G2-like Transcription Factor Family AT3G24120 56.8 5.1e-39 158.7
Vvi2g717 . 193 336 G2-like Transcription Factor Family AT1G32240 66.9 1.6e-38 156.0
Vvi18g841 . 1 160 G2-like Transcription Factor Family AT5G42630 57.5 6.7e-44 174.5
Vvi6g486 . 112 394 G2-like Transcription Factor Family AT5G59570 51.3 1.3e-63 240.4
Vvi11g406 . 1 294 G2-like Transcription Factor Family AT2G03500 58.5 4.5e-89 325.5
Vvi1g270 . 1 238 G2-like Transcription Factor Family AT1G25550 61.4 4.1e-67 251.9
Vvi1g270 . 2 238 G2-like Transcription Factor Family AT3G25790 51.8 3.6e-49 192.2
Vvi9g1111 . 1 449 G2-like Transcription Factor Family AT3G13040 51.0 1.1e-93 340.9
Vvi6g486 . 112 361 G2-like Transcription Factor Family AT3G46640 55.4 8.2e-67 251.1
Vvi6g486 . 128 310 G2-like Transcription Factor Family AT5G05090 51.9 3.5e-39 159.1
Vvi5g894 . 1 213 G2-like Transcription Factor Family AT4G13640 69.8 6.1e-61 231.5
Vvi5g894 . 1 213 G2-like Transcription Factor Family AT3G24120 74.4 4.5e-80 295.0
Vvi8g1362 ECH 28 214 G2-like Transcription Factor Family AT3G24120 54.4 6.8e-44 174.9
Vvi19g1171 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 7.1e-41 164.9
Vvi3g1096 . 12 167 G2-like Transcription Factor Family AT3G24120 56.8 5.1e-39 158.7
Vvi1g923 . 1 287 G2-like Transcription Factor Family AT1G69580 54.2 6.5e-59 224.9
Vvi19g1171 . 1 327 G2-like Transcription Factor Family AT1G79430 59.0 1.5e-90 330.1
Vvi3g1096 . 5 212 G2-like Transcription Factor Family AT1G79430 61.9 3.8e-57 219.2
Vvi5g894 . 16 191 G2-like Transcription Factor Family AT1G79430 60.4 5.0e-41 165.6
Vvi6g486 . 128 310 G2-like Transcription Factor Family AT3G10760 53.4 2.3e-40 163.3
Vvi6g486 . 133 310 G2-like Transcription Factor Family AT2G40970 51.9 1.9e-39 159.8
Vvi7g615 . 8 323 G2-like Transcription Factor Family AT4G28610 51.1 4.9e-69 258.8
Vvi14g670 . 67 313 G2-like Transcription Factor Family AT4G28610 52.6 2.0e-54 210.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008523 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14364 PF00249 Myb_DNA-binding 1.20E-05 CL0123 Vvi TF