Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g841 ATGTTCTTTAGCTCAAACCCTATAATGGGAACCACATCACCCTTGCCTGATCTCTCCTTGCAGATCAGCCCCCCATCCATTTCAGATTGTGAGCCCATGTTGAGCTTAGGTTTAGAGATGGCAGCTCTAAATCCTCCACCCCTAGAACTACCAAGAAACCTTCATCATAACCACCACAACCACCAACCTCAAATCTACGGGCGTGAGTTCAAGAGAAATTCAAGAATGATGAATGGCAGCAAAAGAAGCATCAGAGCTCCTAGAATGAGATGGACTACAACCCTCCATGCCCATTTCGTCCATGCAGTCCAGCTTCTTGGCGGCCATGAGAGAGCAACACCAAAATCAGTCTTAGAGTTGATGAATGTGAAAGATCTAACTTTAGCTCACGTGAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGGAACAGGTCAAGGGCAAACAGATATGGGTTTGAACCAAAGGACAGGGATCGGTCAAGTGGAGCTAGGAGGATTATCTTGTGATAAAGCTGATGCCACCCCTTCTTTTTCTTCCAATACACCTCAACCTTCAACACCGCAAAAAATCTCACGATCTTCGTGGTCATTATCAATGGAGACAAACGATGAAGGCCGCCTCAGTCATGAAAATGGGCTAAAATATTCTCATCTCATGGCAAATGACACCAAGATGGAAGGACATAAGGTTGCCCTCCATGTGGCTGAAGGACCAAAAGAGAGGGTGGATTCTAGCGCCTTGTCACCTTCGGATATGTTGCTTAATCTCGAGTTCACCCTTGGAAGACCAAGTTGGCAAATAGACTACGCGGATCAATCTCCGAATGAGCTAGCTCTTCTCAAGTGTTAA 864 45.6 MFFSSNPIMGTTSPLPDLSLQISPPSISDCEPMLSLGLEMAALNPPPLELPRNLHHNHHNHQPQIYGREFKRNSRMMNGSKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGTGQGQTDMGLNQRTGIGQVELGGLSCDKADATPSFSSNTPQPSTPQKISRSSWSLSMETNDEGRLSHENGLKYSHLMANDTKMEGHKVALHVAEGPKERVDSSALSPSDMLLNLEFTLGRPSWQIDYADQSPNELALLKC* 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9692028 9695345 + Vvi18g841 Vvi18g841 780544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g841 287 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 13 281 - -
Vvi18g841 287 MobiDBLite consensus disorder prediction 177 207 - -
Vvi18g841 287 SUPERFAMILY Homeodomain-like 84 141 IPR009057 -
Vvi18g841 287 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 87 140 IPR006447 GO:0003677
Vvi18g841 287 MobiDBLite consensus disorder prediction 174 211 - -
Vvi18g841 287 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 13 281 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vvi18g841 287 Pfam Myb-like DNA-binding domain 88 139 IPR001005 -
Vvi18g841 287 Gene3D - 86 143 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14364 PF00249 Myb_DNA-binding 1.20E-05 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g841 - - vvi:100259077 517.309