Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g85 ATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAAGAAGGAAAAGCCAGTAAAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGGAGGAAGATGATGAGTAA 462 46.1 MKGGRSKSDTKKADAKLSVKKGAAATKAGKKTKKEKPVKDPNKPKRPASAFFVFMEEFRKQYKEKHPSNKSVSVVGKAGGDKWKSMSEAEKAPYVAKAEKRKVEYEKNMKAYNKKQAEGTKVVEEEDESEKSLSEVNDQEDDEDGSEEEEDDE* 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 807454 809607 - Vvi18g85 Vvi18g85 779788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g85 153 CDD HMGB-UBF_HMG-box 44 110 - -
Vvi18g85 153 MobiDBLite consensus disorder prediction 1 47 - -
Vvi18g85 153 MobiDBLite consensus disorder prediction 129 153 - -
Vvi18g85 153 Pfam HMG (high mobility group) box 44 113 IPR009071 -
Vvi18g85 153 Gene3D High mobility group box domain 27 129 IPR036910 -
Vvi18g85 153 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 152 - -
Vvi18g85 153 MobiDBLite consensus disorder prediction 62 85 - -
Vvi18g85 153 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 152 IPR031061 -
Vvi18g85 153 SMART hmgende2 43 114 IPR009071 -
Vvi18g85 153 MobiDBLite consensus disorder prediction 1 18 - -
Vvi18g85 153 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 44 113 IPR009071 -
Vvi18g85 153 Coils Coil 95 115 - -
Vvi18g85 153 MobiDBLite consensus disorder prediction 28 43 - -
Vvi18g85 153 MobiDBLite consensus disorder prediction 111 128 - -
Vvi18g85 153 SUPERFAMILY HMG-box 31 119 IPR036910 -
Vvi18g85 153 MobiDBLite consensus disorder prediction 111 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g85 K25507 HMGBP; high mobility group B protein, plant - vvi:100246082 232.646
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1195 Vvi18g85 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g85 . Blo12g00851 . Bda03g00323 Bpe02g00306 Bpe04g00284 Bma04g00290 . . . Cma01g02021 Cma09g00049 Car01g01588 . . Cpe06g00019 . . . . . . . . . . . . . . . Cone4ag2024 Cone7ag1941 Cone17ag1458 . Lsi04g01812 Csa04g02709 . . . . Bda11g00975 . . . . . Sed01g2431 Cmo01g02078 Cmo09g00052 . . . Car09g00041 . . Bhi09g02874 Tan01g5116 Cmetu06g2583 . . Mch11g0052 . Cla11g01828 Cam11g1895 Cec11g1920 Cco11g1929 Clacu11g2059 Cmu11g1864 Cre11g2271 . . Chy07g00398 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002005 3 3 2 2 2 0 4 1 0 2 2 1 3 2 2 3 0 5 2 1 2 2 2 2 2 2 2 2 1 2 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14365 PF00505 HMG_box 7.30E-22 CL0114 Vvi TR