Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g850 ATGCATACTCTAATCTCCGGAGGTAACGACACAACTGTTGTCTCTCTGACATGGGCACTCTCTCTTGTACTAAACAACCATGACACCTTAAAAAAAGCTCAACAAGAATTAGACATCCAAGTTGGGAAGGAAAGATTAGTGAATGAACAAGATATAGGTAAGTTGGTCTATCTCCAAGCCATTGTTAAAGAGACATTACGGTTATATCCATCAGGACCACTTGGAGGACTACGCCAATTTACCGAGGATTGCACCTTAGGTGGATACCATGTCTCTAAAGGCACCCGTTTAATAATGAACCTTTCGAAGATCCAAAAGGATCCAAGAATTTGGTCAAATCCAACAGAATTCCAACCAGAGAGGTTTCTCACCACCCATAAAGATGTTGATCCTTGGGGAAAACATTTTGAATTTATACCATTTGGAGCTAGTCGAAGAGTATGTCCAGGAATAACTTTTGGTCGATATGCGCGAGAGCCTTGGACTTACAAACATGAAATCTACCCCACTTGA 513 41.13 MHTLISGGNDTTVVSLTWALSLVLNNHDTLKKAQQELDIQVGKERLVNEQDIGKLVYLQAIVKETLRLYPSGPLGGLRQFTEDCTLGGYHVSKGTRLIMNLSKIQKDPRIWSNPTEFQPERFLTTHKDVDPWGKHFEFIPFGASRRVCPGITFGRYAREPWTYKHEIYPT* 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9762402 9784663 + Vvi18g850 Vvi18g850 780553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g850 170 PANTHER CYTOCHROME P450 82C3-RELATED 3 154 - -
Vvi18g850 170 PRINTS P450 superfamily signature 7 24 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g850 170 PRINTS P450 superfamily signature 60 71 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g850 170 PRINTS P450 superfamily signature 139 148 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g850 170 PRINTS E-class P450 group I signature 16 42 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g850 170 PRINTS E-class P450 group I signature 59 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g850 170 PRINTS E-class P450 group I signature 100 124 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g850 170 PRINTS E-class P450 group I signature 138 148 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g850 170 Pfam Cytochrome P450 2 155 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g850 170 SUPERFAMILY Cytochrome P450 2 156 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g850 170 Gene3D Cytochrome P450 1 157 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g850 170 PANTHER P450, PUTATIVE-RELATED 3 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g850 - - - vvi:109121583 294.278
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g850 . Blo12g00927 . Bda03g00236 . . Bma04g00188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01616 Csa03g04161 Chy04g00555 . . . . . . . . . . . Cmo09g00183 . . . . . . Bhi09g02035 . . . . . . Cla05g01983 . . . . . . . . . Cme04g00662
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015081 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 1 1 0 0 0 9 14