Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g855 ATGTTGTCAGTTCTTGATGGCAAAATCCTTGGTGATTACGATGCTGATACCGTCAATAAAGCCACATGCCTAGCTCTAATTGTAGGAGGTAGTGACACAACAGTTGTCACTTTAACTTGGGCGCTCTCTCTTCTATTAAATAATCGTGACACCTTGAAAAAGGCACAAGAAGAATTAGATATTCAAGTTGGCAAGGAAAGATTAGTGAATGAACAAGATATCAGTAAATTGGTCTATCTCCAAGCCATTGTTAAAGAGACATTACGATTATATCCGCCAGCGGCACTTGGAGGACCACGTCAATTCACTGAGGACTGCACCTTGGGTGGTTACCATGTCTCCAAAGGCACCTGA 354 42.09 MLSVLDGKILGDYDADTVNKATCLALIVGGSDTTVVTLTWALSLLLNNRDTLKKAQEELDIQVGKERLVNEQDISKLVYLQAIVKETLRLYPPAALGGPRQFTEDCTLGGYHVSKGT* 118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9816438 9818721 + Vvi18g855 Vvi18g855 780558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g855 117 Pfam Cytochrome P450 20 117 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g855 117 Gene3D Cytochrome P450 4 117 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g855 117 PRINTS P450 superfamily signature 29 46 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g855 117 PRINTS P450 superfamily signature 82 93 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g855 117 PRINTS E-class P450 group I signature 18 35 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g855 117 PRINTS E-class P450 group I signature 38 64 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g855 117 PRINTS E-class P450 group I signature 81 99 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g855 117 PANTHER P450, PUTATIVE-RELATED 1 117 - -
Vvi18g855 117 PANTHER CYTOCHROME P450 82C3-RELATED 1 117 - -
Vvi18g855 117 SUPERFAMILY Cytochrome P450 16 117 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g855 - - - vvi:100260929 228.024
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g855 . Blo12g00924 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01622 Csa03g04165 . . . . . . . . . . . . . . . . . . . Bhi09g02052 . . . . . . Cla05g01973 . . . . . . . . . Cme04g00638
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015081 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 1 1 0 0 0 9 14