Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g858 ATGGAGTTCCATCTTCCATTTTCAATTACCACGGCCAGCATGTTTATCTTTCTACTCTCTTTCTATTATTTGTTAAAGATGCTAAGGCGTTCTGAGAGGAAAAGAACTGCCCCGGAAGCCGCCGGGGCATGGCCTGTGATTGGTCACCTCCATCTGTTAGGAGGCTCTGAGCTGCCCCACAAAACCTTGGGGGCTATGGCCGACAAGTACGGGCCGATCTTCTTTATCAAGCTTGGTGCGCGACCAGTATTGGTGGTGAGTAATTGGGAGATTGCTAAGGAGTGCTTTACTACCAACGACAAAGCTTTCGCCAATCGTCCCAAATTAATAGCGGTGGAGGTTATGGGCTACAACAACGCCATGTTCGGCTTTAGCCCATATGGCTCCTACTGGCGCCAGATGCGCAAGATAGTCACTACACATCTTCTCTCAAACAGAAGCCTGGAGATGCTGAAACTGGTACGTATATCGGAGGTGAAGGCAACGATAAAAGAGCTACATGAGTTATGGGTCTCTAAGAAAAGTGATTCAAACATGGTATCAGTGGAGATGAGGCGATGGTTTGGAGATCTAGCCCTAAATTTGGCTGTAAGGATGACTGCCGGGAAGAGATTTTCTAGTGACAAGGAAGGAGTGGAGTACCACAAAGCAATAAGATGTTTTTTTGAGTTGACGGGGAAGTTTATGGTGTCGGATGCTCTCCCTTTTCTAAGGTGGTTTGACTTGGGAGGCTATGAGAAGGCCATGAAGAAGACTGCAAAAAGTCTAGACCATCTACTTGAAGACTGGTTACAGGAACATAAAAGAAAGAGAGTTTCTGGGCAGCCCACTGGGGACCAAGATTTTATGGATGTGATGCTGTCCATTTTAGATGATGAGACCAGGGCCCAAGATATAAAGAGTTCCGATGCCGATATCATTAACAAAGCTACATGCCTGAATGTCTTAATAGCGACCACCGATACTGTTACAGTTAGCCTAACATGGGCTCTGTCGTTACTGTTAAACAACCGACACGTATTGAACAAAGCCAAAGAGGAGCTAGATTTGCATGTGGGAAGGGAAAGGCGAGTCGAGGAACGGGACATGAGCAACCTGGTCTACCTCGATGCTATCATCAAGGAAACTCTGCGTTTATATTCAGCTGTTCAAGTTCTAGCTGCACATGAGTCCACGGAGGAATGCGTTGTAGGTGGCTGCTACATACCCGCTGGGACGCGCCTGATAATTAATCTTTGGAAGATTCACCACGATCCAAGTGTATGGTCGGATCCTGATCAGTTCATGCCTGAGAGATTTCTCACTACGCATAAGGATGTTGATGTTAGAGGTATGCATTTTGAATTGATTCCATTTGGAAGTGGAAGAAGAATTTGCCCTGGAGTGTCCTTAGCTCTACAATTTCTGCAATTCACCCTAGCCAGCTTAATTCAAGGATTTGAGTTTGCAACGGCATCCGATGGACCGGTTGATATGACTGAAAGCATTGGGTTAACCAACCTCAAGGCCACCCCGCTTGACGTTCTCCTCACTCCTCGCCTCTCTTCTAATCTCTATGAGAACATGGCTCAAAGAAAACCTACGAAAGCTAGAACCTTTCAATATGGAACCATATGTCTAAACGAAGTGTTGAATCCAAACCTAAGGTTTAACTCTTTATTTTCTCAAAACCTTTTTGAAGAACATAAGGTTATTGTAGATAATTTTTGGTCTTTAAAACCACAAAGTTTTCCGAACCAAAATTTAGAATACGCTTATGGAAAAACAGTGTCAGCTTTAGCCCAACATTTACAAAACCTTCAAAACCAACTGATTGCTTTAGAAACCCAAAAATTCCAAAACCTCAAAATCCAAGAAAATCAAGAAAAACTGATAGAAGATTTGAAAACCAGTACAGTGTCAACCAATCAAACCAGCTGTTTAAACAGTCAACCTGAAGTAATTAGTTTAATTAAGAAATCAGCTCTTCTGACTGAACAATATGAAAGGCTTGTTGTTAAAAACATAATTGGAGTTGATAACTACTCTTTCGTCAAAACCTTTTTTCTACAAAACCAATATAACAAAGTGTTTAAAAATCAAGAACTTTTGTATAAACATTTTAGAACTAAAAATGTCGGGATAAAAACAGGGTATATGGCATATCACGACCCTGAATTTTTCTTTGTTATATATTTAGCTTATGTAAATATGTCTGTTGTAAATAAAGAAAATTTTGATTTGGTACCGCAACTTATGGATCAGGGAATTTTAAAAAATGTTTTTATGAACCATATATCTCAAATCCCTGAAAATTTCCCAGAAAAATTGAAAGATATTTTAACTTATCTTTTTAAAGCCGAAAAATATATAGATATTTCTTTTGAAACCATTCCACCTTTATTTCAACCCGATGGATCAGTAGTACCAGCCTATCATCATGTATATATAAAACATAATAAAGAACCACTCATCCCTCAACAAGAACCAGAATGGGAAATGACCCGTTCAAATGAATTTCCAGAATTTTTTACTCGCTTTAGAGCTTTTCAAATCTATGATCTTATACCAACCCGGAATAAATTATTTCATCTCATTGGCGAAACAAAAACCATGTCTATATGGAGAATAAAACCTTTAGAACACATCATTGTTCCAAACCCTTTTATTACTTCTGAAGAACAGGATTTTATAACCGAACTCAGTGTAGATATACCGGAACCATCTTCCTACCTCAGCGATGACGCATTATTTTGGGACAACCTGGACGATGAAAGTTATCATAATCTACAAAATGCAATGGAAGGATGA 2790 39.96 MEFHLPFSITTASMFIFLLSFYYLLKMLRRSERKRTAPEAAGAWPVIGHLHLLGGSELPHKTLGAMADKYGPIFFIKLGARPVLVVSNWEIAKECFTTNDKAFANRPKLIAVEVMGYNNAMFGFSPYGSYWRQMRKIVTTHLLSNRSLEMLKLVRISEVKATIKELHELWVSKKSDSNMVSVEMRRWFGDLALNLAVRMTAGKRFSSDKEGVEYHKAIRCFFELTGKFMVSDALPFLRWFDLGGYEKAMKKTAKSLDHLLEDWLQEHKRKRVSGQPTGDQDFMDVMLSILDDETRAQDIKSSDADIINKATCLNVLIATTDTVTVSLTWALSLLLNNRHVLNKAKEELDLHVGRERRVEERDMSNLVYLDAIIKETLRLYSAVQVLAAHESTEECVVGGCYIPAGTRLIINLWKIHHDPSVWSDPDQFMPERFLTTHKDVDVRGMHFELIPFGSGRRICPGVSLALQFLQFTLASLIQGFEFATASDGPVDMTESIGLTNLKATPLDVLLTPRLSSNLYENMAQRKPTKARTFQYGTICLNEVLNPNLRFNSLFSQNLFEEHKVIVDNFWSLKPQSFPNQNLEYAYGKTVSALAQHLQNLQNQLIALETQKFQNLKIQENQEKLIEDLKTSTVSTNQTSCLNSQPEVISLIKKSALLTEQYERLVVKNIIGVDNYSFVKTFFLQNQYNKVFKNQELLYKHFRTKNVGIKTGYMAYHDPEFFFVIYLAYVNMSVVNKENFDLVPQLMDQGILKNVFMNHISQIPENFPEKLKDILTYLFKAEKYIDISFETIPPLFQPDGSVVPAYHHVYIKHNKEPLIPQQEPEWEMTRSNEFPEFFTRFRAFQIYDLIPTRNKLFHLIGETKTMSIWRIKPLEHIIVPNPFITSEEQDFITELSVDIPEPSSYLSDDALFWDNLDDESYHNLQNAMEG* 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9846631 9858576 + Vvi18g858 Vvi18g858 780561

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g858 929 Gene3D Cytochrome P450 23 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g858 929 SUPERFAMILY Cytochrome P450 43 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g858 929 Coils Coil 590 610 - -
Vvi18g858 929 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 452 461 IPR017972 GO:0005506|GO:0016705
Vvi18g858 929 Pfam Cytochrome P450 42 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g858 929 PRINTS P450 superfamily signature 318 335 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g858 929 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g858 929 PRINTS P450 superfamily signature 450 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g858 929 PRINTS P450 superfamily signature 459 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g858 929 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g858 929 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g858 929 PRINTS E-class P450 group I signature 191 209 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g858 929 PRINTS E-class P450 group I signature 327 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g858 929 PRINTS E-class P450 group I signature 370 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g858 929 PRINTS E-class P450 group I signature 411 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g858 929 PRINTS E-class P450 group I signature 449 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g858 929 PRINTS E-class P450 group I signature 459 482 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g858 929 PANTHER CYTOCHROME P450 82C3-RELATED 34 520 - -
Vvi18g858 929 PANTHER CYTOCHROME P450 34 520 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g858 - - K23136 vvi:100248962 1043.49
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g513 Vvi18g858 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g858 . Blo12g00922 . Bda03g00241 . . Bma04g00191 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1876 . . . Lsi04g01627 Csa03g04169 Chy04g00548 . . . . . . . . . . . Cmo09g00178 . . . . . . Bhi09g02057 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442