Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g859 ATGTTTCCGGTGAAAGTTGAAGGTAATGTAAAGCAACAAGGCGCCGGTGCGGCAACGGAAAAGGTTGTTGTGGCGGTTAGAGCAGAGAGAGTGATCTCCAAGACTGCATTAGCATGGGCTCTGAGTCACGTCGTTCACGCCGGCGATTGCATAACGTTGCTCGCTGTTTTTGCCACGAAGAAAACGGGTCGGAGATTATGGAACTTCCCAAGATTGACAGGGGATTGTGCGAACAGTCACCGGGAGAGATTACCGGATCGGATTTGTGAGATCTCCGAGTCTTGTTCTCAGATGGTTCTCCAGTTCAACGACCAAGTCGAGGTTAGAGTGAGGATTAAGGTGGTATCAGGTACACCTGGCGGTGCAGTGGCAGCTGAAGCAAAGAGCAATGGAGCCAACTGGGTCATACTGGACAAGAAACTGAAGCAAGAACTGAAGCATTGCATGGAGGAACTCCACTGCAACATTGTTGTGATGAAGGGTTCTCAACCAAAAGTCCTTAGGCTGAATTTGGGAAGCTCAAATGAACTTCAAACACCTTTCTTTTCTGCTTCTTCTTCACCAGACATGGAAAACAGAACACTGCAAGGTCACAAGATCAAGCATTCTACTCCAGTGAGCAGCCCTGAAGATCCAAGTACTTCCTTTACTAGAACCACAAGGGAAGGTTCATTATCAAGTTCTGATACATTGACTTCCCCTTTCCTTGTTTATGAACAAAATCCTCTTTTTGAAGGACTGAATAAAGGAAAATACAGGCCAGTTTATGAAGATGATTCAGATGAACCACCAACAGCACTTGACTGTGAAAGGCTTATCACTCTTTCAGCACCCCCAGCATCATCTGTGAAAAGTGACCATCAGAGTGTATTTTGGATTCCCCAAAACCACATCGTTGCTGAGAAGGCCCCATTAAACAAAAACTCCAGAAGCACCCAAAAAATGAGATCTCCTTCCAGAACTCTACTCGACAAGTTTGTTGAGTTTGATAAAGATACGAGGATCAGAGGACCTGGGTCCATCCAAACCCGTCAAAGAGACTACAGTTTTGACTCAACCATCAGAGAGGCGGTCCCTTTAGGCAGAACTTCCTCAAAACCACCTCCTTTGTGCTCACTATGCCAACACAAGGCTCCAGTTTTTGGAAAACCTCCAAGGCAGTTTGCTTATGAAGAGCTACAAGAAGCTACAAACGGATTCTCAGATGAAAATTTCTTGGCAGAAGGTGGGTTTGGTGTGGTTCATAGGGGGGTGCTGAGAAATGGCCAGGTGGTTGCAGTGAAGCAGTTAAAGTATGCTGGGTCTCAAGGAGATGCAGATTTTTGCAGGGAAGTGAGGGTTTTAAGCTGTGCACAGCATAGGAATGTTGTGTTGCTTATTGGATTTTGTATTGAAGGGAGAAAGAGAGTATTGGTTTATGAGTACATATGCAATGGCTCCTTGGACTTCCATCTACATGGAAACAAGACAACCCCACTGGATTGGCAATCACGGCTGAAAATTGCAATTGGAACAGCACGAGGCCTACGATACCTTCATGAAGACTGTAGAGTGGGTTGCATAGTACACAGGGACATGCGACCTAATAATATCCTCCTAACCCATGACTTCGAGCCTCTGGTTGCTGACTTCGGACTTGCTAGATGGCACTCTAACTGGGATATTAATACTGAGGAGAGACTGATTGGAACTTCTGGGTATCTTGCGCCAGAGTATTTGGATGGTGGAAAAATTACACAGAAAGTTGACGTATATGCATTTGGAGTGGTATTATTAGAATTAATGACAGGACAGAGGGCCAGAGACTTGCAATTTTACAGGGGACGGAATTTTTTACCTGAGTGGATCCACCCTCTCCCTGCATTACAGCCAAGCCATATTTTAGCTAACAACTACCAACTTGTGGATCCATGCTTAGCCTCTGATGAACTCCACGACTTCCCCTATCAACTACAGGCAATGGGCTGCGCTGCTTCCTTGTGTCTACGTCAAGATCCTGAATCCAGACCAACCATGTCTAAGGTCCTTAGAGTACTAGAAGGAGGTGATGCTGCAATTCCTCTGTGTTTGGACTTGAATTCAGTTGGAAGTAGAAGTGGCCATATGCATGGTCTGAGCTCACAGACACAGCCTGAGTCAAGGATAAACCACTCTCGCAGGCTTTCACATTGA 2172 45.67 MFPVKVEGNVKQQGAGAATEKVVVAVRAERVISKTALAWALSHVVHAGDCITLLAVFATKKTGRRLWNFPRLTGDCANSHRERLPDRICEISESCSQMVLQFNDQVEVRVRIKVVSGTPGGAVAAEAKSNGANWVILDKKLKQELKHCMEELHCNIVVMKGSQPKVLRLNLGSSNELQTPFFSASSSPDMENRTLQGHKIKHSTPVSSPEDPSTSFTRTTREGSLSSSDTLTSPFLVYEQNPLFEGLNKGKYRPVYEDDSDEPPTALDCERLITLSAPPASSVKSDHQSVFWIPQNHIVAEKAPLNKNSRSTQKMRSPSRTLLDKFVEFDKDTRIRGPGSIQTRQRDYSFDSTIREAVPLGRTSSKPPPLCSLCQHKAPVFGKPPRQFAYEELQEATNGFSDENFLAEGGFGVVHRGVLRNGQVVAVKQLKYAGSQGDADFCREVRVLSCAQHRNVVLLIGFCIEGRKRVLVYEYICNGSLDFHLHGNKTTPLDWQSRLKIAIGTARGLRYLHEDCRVGCIVHRDMRPNNILLTHDFEPLVADFGLARWHSNWDINTEERLIGTSGYLAPEYLDGGKITQKVDVYAFGVVLLELMTGQRARDLQFYRGRNFLPEWIHPLPALQPSHILANNYQLVDPCLASDELHDFPYQLQAMGCAASLCLRQDPESRPTMSKVLRVLEGGDAAIPLCLDLNSVGSRSGHMHGLSSQTQPESRINHSRRLSH* 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9884659 9889936 + Vvi18g859 Vvi18g859 780562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g859 723 Pfam Protein tyrosine and serine/threonine kinase 405 678 IPR001245 GO:0004672|GO:0006468
Vvi18g859 723 MobiDBLite consensus disorder prediction 700 723 - -
Vvi18g859 723 Gene3D Phosphorylase Kinase; domain 1 371 475 - -
Vvi18g859 723 ProSitePatterns Tyrosine protein kinases specific active-site signature. 521 533 IPR008266 GO:0004672|GO:0006468
Vvi18g859 723 ProSiteProfiles Protein kinase domain profile. 400 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g859 723 MobiDBLite consensus disorder prediction 700 715 - -
Vvi18g859 723 MobiDBLite consensus disorder prediction 198 229 - -
Vvi18g859 723 Gene3D HUPs 18 161 IPR014729 -
Vvi18g859 723 CDD STKc_IRAK 406 681 - -
Vvi18g859 723 SUPERFAMILY Protein kinase-like (PK-like) 381 679 IPR011009 -
Vvi18g859 723 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 17 714 - -
Vvi18g859 723 PANTHER OS01G0253100 PROTEIN 17 714 IPR045271 GO:0004714|GO:0006468
Vvi18g859 723 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 160 - -
Vvi18g859 723 Gene3D Transferase(Phosphotransferase) domain 1 476 685 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76396 PF07714 PK_Tyr_Ser-Thr 2.20E-43 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g859 - - vvi:100247217 1459.89