Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g860 ATGTTAGAAGAAACGAACAGTATACCGAGACCCAAGTACCGCAATATCATGCATTCGGATCCCAATCTTTCCTCTTCAATCCCAACCGAGGATGATTACCCCATCCGCAACAGCAGTGCTTCCGCCGCCAGTCCTGGTTTCTACGACAACCGCCTGAGCGGAGAAGGCTCTCCAATGACCATGTCTCCTTGGAACCAGACTTCTTCTGAGGCCAAATCCTCATGGTCCCGATTCGAAGAAAACCTGCCTCAGAATGGCCTCATCGGATCCCTGACTCGCGAAGAAGGTCATATTTACTCCTTGGCCGCTACCGGCGAGCTCTTGTACACAGGCTCAGATAGCAAGAATATTCGTGTTTGGAAGAATCTGAAAGAGTTTTCTGGATTCAAATCCAACAACGGAAAGATTAGAGTTTGGAAGGTCTCCCCCAAGAACGCCAGCGTTCACAAACGAGCAGGAACTTTACCAACTTTAAAGGACATATTCAAGAGCTCAATCAATCCAAGCAATTACGTTGAGGTGAGACGGCGCCGTTCTGCTCTCTGGATCAGGCACTCCGATGCCATATCGTGTTTGAGCTTGAACGAAGAGCAGGGCCTTCTGTACTCGGCTTCCTGGGACAGAACCTTTAAGGTTTGGCGAATATCTGATTCCAAGTGTCTGGAATCCATCAGTGCGCACGACGACGCCGTCAACTCCGTAGTGGCCAGCAGTGAGGGCATGGTATTCACCGGCTCCGCCGATGGCTCCGTTAAAGTTTGGCGAAGGGAGTTGCATGGGAAAGGGACAAAGCACGCGTTCGTACAAACGCTTCTGAAGCAAGAATGCGCGAAGCAGTTATCACACGGTGGGGTGCTGAGAGGGCACAAGGTGGCGGTCCTCTGCCTCGCGGCCGCAGCGAATCTGGTGTTCAGCGGGTCTGCGGATAAGACCATATGCGTATGGAGGAGGGAAGGAGTGGTACACACGTGTCTCTCTGTGTTGACTGGTCACACAGGACCAGTCAAATGTTTAGCGGTTGGGGAGGACAAGGAATCCACGGCTAAGAATCAACGCTGGGTAGTGTACAGCGGGAGTCTTGACAAGTCAGTCAAGGTGTGGAGCGTTTCGGACATGGGGATTGATCCGCAACAACAGACTGTGGAGGTCTACTGTCTACATTATTTCTACAGCATCTACTCATGA 1185 51.48 MLEETNSIPRPKYRNIMHSDPNLSSSIPTEDDYPIRNSSASAASPGFYDNRLSGEGSPMTMSPWNQTSSEAKSSWSRFEENLPQNGLIGSLTREEGHIYSLAATGELLYTGSDSKNIRVWKNLKEFSGFKSNNGKIRVWKVSPKNASVHKRAGTLPTLKDIFKSSINPSNYVEVRRRRSALWIRHSDAISCLSLNEEQGLLYSASWDRTFKVWRISDSKCLESISAHDDAVNSVVASSEGMVFTGSADGSVKVWRRELHGKGTKHAFVQTLLKQECAKQLSHGGVLRGHKVAVLCLAAAANLVFSGSADKTICVWRREGVVHTCLSVLTGHTGPVKCLAVGEDKESTAKNQRWVVYSGSLDKSVKVWSVSDMGIDPQQQTVEVYCLHYFYSIYS* 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9890383 9892193 - Vvi18g860 Vvi18g860 780563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g860 394 MobiDBLite consensus disorder prediction 1 72 - -
Vvi18g860 394 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 6 379 IPR045182 -
Vvi18g860 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 224 254 - -
Vvi18g860 394 Gene3D - 48 171 IPR015943 GO:0005515
Vvi18g860 394 Gene3D - 269 388 IPR015943 GO:0005515
Vvi18g860 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 223 IPR001680 GO:0005515
Vvi18g860 394 SMART WD40_4 217 255 IPR001680 GO:0005515
Vvi18g860 394 SMART WD40_4 175 214 IPR001680 GO:0005515
Vvi18g860 394 SMART WD40_4 321 368 IPR001680 GO:0005515
Vvi18g860 394 SMART WD40_4 279 316 IPR001680 GO:0005515
Vvi18g860 394 SMART WD40_4 84 121 IPR001680 GO:0005515
Vvi18g860 394 PRINTS G protein beta WD-40 repeat signature 201 215 IPR020472 -
Vvi18g860 394 PRINTS G protein beta WD-40 repeat signature 242 256 IPR020472 -
Vvi18g860 394 PRINTS G protein beta WD-40 repeat signature 355 369 IPR020472 -
Vvi18g860 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 182 219 - -
Vvi18g860 394 SUPERFAMILY WD40 repeat-like 88 372 IPR036322 GO:0005515
Vvi18g860 394 MobiDBLite consensus disorder prediction 18 46 - -
Vvi18g860 394 Gene3D - 172 268 IPR015943 GO:0005515
Vvi18g860 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 254 IPR001680 GO:0005515
Vvi18g860 394 Pfam WD domain, G-beta repeat 284 315 IPR001680 GO:0005515
Vvi18g860 394 Pfam WD domain, G-beta repeat 219 254 IPR001680 GO:0005515
Vvi18g860 394 Pfam WD domain, G-beta repeat 323 368 IPR001680 GO:0005515
Vvi18g860 394 Pfam WD domain, G-beta repeat 95 121 IPR001680 GO:0005515
Vvi18g860 394 Pfam WD domain, G-beta repeat 185 213 IPR001680 GO:0005515
Vvi18g860 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 286 315 IPR001680 GO:0005515
Vvi18g860 394 MobiDBLite consensus disorder prediction 55 72 - -
Vvi18g860 394 PANTHER PROTEIN JINGUBANG 6 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g860 - - - vvi:100262588 740.725
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g527 Vvi18g860 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g860 Blo01g01543 Blo12g00920 Bda01g00554 Bda03g00243 Bpe02g00412 . Bma04g00193 . Cmo05g00221 Cmo12g00448 . Cma09g00180 . . Sed10g2068 . . Bhi04g00295 Tan02g0857 Cmetu01g0434 . Hepe02g0551 . . Cla08g01527 Cam08g2019 Cec08g1593 Cco08g1730 Clacu08g1708 . Cre08g1489 . . . . . Csa03g04173 Chy04g00544 . Blo17g00826 . Bda08g01311 . . . . Bma05g00099 . Cmo01g01944 Cmo09g00176 Cma12g00505 Cma05g00214 . . . . . . . . . . . Cla05g01970 Cam05g2121 Cec05g2132 Cco05g2184 Clacu05g2109 Cmu05g1985 Cre05g2104 . Csa02g02011 Chy03g01498 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012788 3 1 2 2 1 1 0 1 1 1 1 1 1 0 1 2 1 0 0 1 1 1 1 0 0 0 1 1 1 1 28