Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g862 ATGATCTGTAAAACCCGTCTTCTCCTCTTCTTAGCTCTCTCCATTCTCCCCATGTACGTCATCGCTCACAGCTCAAGCAAGTGCCACCAAGAATGCGGCCACAACAAAACAGTTAAACACCGTCGTTTCCCTTTCATCGGAACCTCCTCCGCCTGCCAAATCCGTCTGAACTGCAGCACAGACGGTGACATCATGGTGGGTGAATTTCCAGTCCGGAGCATATTCCCCGAAAGCATACTGGTCAACCTGGAGGTGAGATGCAACCGCTCGATCAAATCCTTGGACCATCTCTTCAACACAAATTACGCCCCAACTACGCGTAATGGAATTTTACTGAAACACTGCAAATCACCAGCGTCAACATGCACGATCCCAACAACTAAGGTAAACACTCACTTTGAGTCGATAGATTGTGGTTCAGACAACTATAGCATAAGCTGTTATTCTGAGGAACACGAAAATGGTTTCCTCAGTCAAGCTAACGTGAGTAAAAGCCACTGTCAATATCTTTTGTCGTCCATATCCGTCGACGCCTTCAATACATCGTCGGTTGTGTTGGATGTTGGGATTGTTCAATTGGGATGGTGGCTTTTGGGTGAATGCAAATGTCACCAGGAAGCCACATGTACTGAAATCCAGACCCCGGTCGCCGGCCAGCAGGGTTTTCGGTGCAAGTGCAGGGATGGATTCGATGGTGATGGTTACCAGGCCGGAGTGGGCTGCCGGAAAGCCTCTTCTGGGTGCAATCCTTCTAGATACATTTCTGGCCAATGTGGAGGTCCCAGCAGATTTTTTGTTTTAGCTGGAGGGATTGCTCTGATGATCAGTATCAGTGCAATATGCTGTTTTATGCGAAGATGCTTGACTTCGAAAGCTAGAAACAGCACAAGGCGGCGTCTATCTGAAGCTACGGGAAAATGCAGCATTCCTATCTACCCCTACAGAGCAATTGAGAAAGCCACGAGTAGTTTCTCTGAGAAACAAAGGCTGGGAACTGGGGCCTATGGGACAGTTTACTCAGGAAAACTCCATAACCAGTGGGTTGCCATTAAAAGGATCAAACACAGAGATACTGACAGTATTGAGGAAGTGTTGAATGAGATCAAGCTCATTTCTTCAGTGAGCCACCCGAATCTAGTCCGCCTCCTAGGGTGCTCCATAGAAAAAGGTGAACAGATACTTGTCTATGAATTCATGGCCAACGGAACATTGTCTCAGCATTTACAAAGAGAGAGAGGCAATGGGCTTGTCTGGGCAGTTCGCCTGAGCATTGCCACTCAAACCGCTCAAGCCATAGCTCATCTCCACTCTGCTCTCAACCCTCCCATATATCACAGAGATATCAAGTCTAGCAACATACTCTTAGATCACAACTTCATCCCTAAGCTTGCAGATTTTGGTCTTTCAAGACTTGGTATGGCTGAATCCTCCCACATCTCAACCGCCCCTCAGGGAACGCCTGGGTACCTTGATCCTCAGTACCATCAGAACTTCCATCTCTCGGATAAAAGTGATGTTTATAGCTTTGGAGTAGTTCTTGTGGAGATAATAACAGCATTAAAAGTGGTGGACTTTTCTCGGCCTCAGAATGAGGTGAATCTGGCTGCGCTCGCTATTGACAGGATTGGTAAGGGGCGTTTAGATGAGATAATAGATCCATTCCTAGAGCCCCACAGGGATGCTTGGAGCCTTTCTTCTCTGCACAAGGTGGCGGAACTGGCATTCAGATGCCTTGCATTTCACAGGGACATGAGACCTTCTATGATGGAAGTGGCAGCTGAGCTTGAGCAAATTAAACTTTGTAAATGGGCAACTTCAGAGGACAACATGTGCACAGCTTCATCAGAGACATCCTCCTGCTCTTCCTCATCTAATGTAAGCGAGATACCGCTTAGCATGACAGTTGAAAAAGGTGGATTGGGTAGCGAAGGTCTATTTGTGCTTCCTACTAAGGTGATTAGTATGAATTCATTGGGCAGATTGAAGGATACTTCACCTGTTTCAGTGCAGGATCCATGGTTAAGCGGACAGAGTTCACCCTCATCCAACAGTTTGCTGAGTAATATAATTCAGCGACATGCATAA 2085 46.81 MICKTRLLLFLALSILPMYVIAHSSSKCHQECGHNKTVKHRRFPFIGTSSACQIRLNCSTDGDIMVGEFPVRSIFPESILVNLEVRCNRSIKSLDHLFNTNYAPTTRNGILLKHCKSPASTCTIPTTKVNTHFESIDCGSDNYSISCYSEEHENGFLSQANVSKSHCQYLLSSISVDAFNTSSVVLDVGIVQLGWWLLGECKCHQEATCTEIQTPVAGQQGFRCKCRDGFDGDGYQAGVGCRKASSGCNPSRYISGQCGGPSRFFVLAGGIALMISISAICCFMRRCLTSKARNSTRRRLSEATGKCSIPIYPYRAIEKATSSFSEKQRLGTGAYGTVYSGKLHNQWVAIKRIKHRDTDSIEEVLNEIKLISSVSHPNLVRLLGCSIEKGEQILVYEFMANGTLSQHLQRERGNGLVWAVRLSIATQTAQAIAHLHSALNPPIYHRDIKSSNILLDHNFIPKLADFGLSRLGMAESSHISTAPQGTPGYLDPQYHQNFHLSDKSDVYSFGVVLVEIITALKVVDFSRPQNEVNLAALAIDRIGKGRLDEIIDPFLEPHRDAWSLSSLHKVAELAFRCLAFHRDMRPSMMEVAAELEQIKLCKWATSEDNMCTASSETSSCSSSSNVSEIPLSMTVEKGGLGSEGLFVLPTKVISMNSLGRLKDTSPVSVQDPWLSGQSSPSSNSLLSNIIQRHA* 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9901319 9904980 + Vvi18g862 Vvi18g862 780565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g862 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Vvi18g862 694 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 635 IPR045274 GO:0007166
Vvi18g862 694 Gene3D Laminin 201 236 - -
Vvi18g862 694 SMART serkin_6 324 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g862 694 MobiDBLite consensus disorder prediction 669 688 - -
Vvi18g862 694 SUPERFAMILY Protein kinase-like (PK-like) 302 596 IPR011009 -
Vvi18g862 694 ProSiteProfiles Protein kinase domain profile. 324 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g862 694 Gene3D Phosphorylase Kinase; domain 1 303 398 - -
Vvi18g862 694 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 24 635 - -
Vvi18g862 694 Pfam Protein kinase domain 324 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g862 694 Gene3D Transferase(Phosphotransferase) domain 1 399 619 - -
Vvi18g862 694 ProSitePatterns Protein kinases ATP-binding region signature. 330 351 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g862 - - - vvi:100855306 1378.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g862 . . . . . . . . Cmo05g00222 Cmo12g00445 . . . Car12g00472 . . Cpe07g00450 Bhi04g00293 . . . . . Lcy13g2018 Cla08g01525 . . . . . . Cone4ag1879 Cone7ag1788 Cone17ag1312 . . . . Cme03g01991 . Blo18g00827 . Bda01g01485 Bpe02g01680 . Bma01g00774 . . . . Cma12g00502 Cma05g00216 Car05g00176 . Cpe11g00178 . . . . . . . . . . . . . . . Lsi08g01427 Csa02g02013 Chy03g01496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001068 3 4 2 2 3 2 4 2 2 2 2 2 4 2 1 4 2 6 4 2 2 2 1 2 1 2 2 2 2 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76397 PF00069 Pkinase 1.00E-43 CL0016 Vvi PK