Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g869 ATGGCAGCGTCCCTTCATGTAGCGGCGACGCTGAGGCAGCCGACTAAGGCCGGCTTGCCAGCTAAGACAGGCCTGCAGCTGAAATCTTCTCCGAGCGTTTGCAAGGCTTTTGGATACGACCCAGCCGGGGCCAGACTCACTTGCTCCCTCCAAACTCATGTCAAGGATTTGGCTCAAAAGTGCGCCGATGCCGCCAAGATTGCCGGCTTCGCTCTCGCCACCTCCGCCTTCCTTGTCTCGGGAGCAGGTGCTGAGGGAGTTCCGAAGCGGCTAACATATGACGAAATCCAAAGCAAGACATACATGGAAGTGAAAGGAACCGGAACTGCAAACCAGTGCCCCACCATCGATGGAGGCGTGGATTCCTTTGCCTTCAAAACAGGCAGTTACAACATGAAGAAGTTCTGCTTAGAGCCCACTTCATTCACTGTAAAAGCCGAAGGCGTCAGCAAGAACGCCCCAGCTGAGTTCCAAAACACCAAGCTAATGACTCGCTTGACCTACACCCTCGACGAGATCGAAGGTCCCTTCGAGGTGTCCTCTGACAGAACCGTCAAATTCATTGAGAAAGACGGCATCGACTACGCCGCCGTCACTGTCCAGCTTCCCGGTGGCGAGCGTGTCCCATTTCTATTCACCATCAAACAAGGTGGGTCGACCGGTTATGACAATGCCATCACATTAAGCATAACCAAAAGCAAGCCGGAGAGTGGAGAAGTGATTGGAGTGTTTGAGAGTATACAGCCTTCTGATACTGATTTGGGGGCTAAGGTTCCCAAGGATGTGAAAATCCAAGGGGTCTGGTACGCCCAGCTTGAGTAG 822 53.28 MAASLHVAATLRQPTKAGLPAKTGLQLKSSPSVCKAFGYDPAGARLTCSLQTHVKDLAQKCADAAKIAGFALATSAFLVSGAGAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKTGSYNMKKFCLEPTSFTVKAEGVSKNAPAEFQNTKLMTRLTYTLDEIEGPFEVSSDRTVKFIEKDGIDYAAVTVQLPGGERVPFLFTIKQGGSTGYDNAITLSITKSKPESGEVIGVFESIQPSDTDLGAKVPKDVKIQGVWYAQLE* 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10013440 10015072 + Vvi18g869 Vvi18g869 780572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g869 273 Pfam Manganese-stabilising protein / photosystem II polypeptide 225 272 IPR002628 GO:0009654|GO:0010207|GO:0010242|GO:0042549
Vvi18g869 273 Pfam Manganese-stabilising protein / photosystem II polypeptide 98 216 IPR002628 GO:0009654|GO:0010207|GO:0010242|GO:0042549
Vvi18g869 273 PANTHER OXYGEN-EVOLVING ENHANCER PROTEIN 1, CHLOROPLASTIC 1 221 - -
Vvi18g869 273 PANTHER OXYGEN-EVOLVING ENHANCER PROTEIN 1, CHLOROPLASTIC 224 273 - -
Vvi18g869 273 Gene3D - 118 220 - -
Vvi18g869 273 Gene3D - 221 273 - -
Vvi18g869 273 PANTHER OXYGEN-EVOLVING ENHANCER PROTEIN 1-2, CHLOROPLASTIC 1 221 IPR002628 GO:0009654|GO:0010207|GO:0010242|GO:0042549
Vvi18g869 273 PANTHER OXYGEN-EVOLVING ENHANCER PROTEIN 1-2, CHLOROPLASTIC 224 273 IPR002628 GO:0009654|GO:0010207|GO:0010242|GO:0042549
Vvi18g869 273 SUPERFAMILY OMPA-like 99 273 IPR011250 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g869 K02716 psbO; photosystem II oxygen-evolving enhancer protein 1 - vvi:100260811 512.301
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g869 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag1282 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006050 1 1 2 4 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 39