Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g871 ATGGGGGACTACATCAGCAGCGAGGATGAGTACTATAATGATTATAACGATGATGATCGGGACTCTTTGGATGGGTACCAGCACTTTCGTTTTGAGGGTGGGTGCCAGAATGAGAGTGCGACATCCAGTAAGGTAATTACAAAGGAATCTCTTTTGACAGCACAGAAGGAAGATTTGCATAGAGTAATGGACCTGCTACCATTGGGGGAACACCATGCTAGAAGCTTACTTATTCATTGTCGTTGGGATGTTGAAAGGGTGTTGGCAGTCCTTGTGGAGAAGGGAAAAGAACAGCTATATGCTGATGCGGGTGTGACAGTGGTGGAGCATGATGATCTTTCCTTGTCAAAGTTTTCATCTCCATTAACATGCAATATCTGCGTTGACGATGTATCTACTAACGAGATGACAATAATGGACTGTGGCCACTACTTTTGTAACAATTGCTGGACGGGGTATTTTATTGTGAAGATAAATGATGGTCAGAGTAGACGCATTAGGTGCATGGCATACAAGTGCAATGCTATTTGTGATGAAGCAAAAATCAGAAAGCTAGTAAGTGCAAGAGATCCTAATCTGGCAGAGAGATTCGATCGTTTTCTTTTGGAATCATACATTGAGGATAATAGAAGGGTGAAATGGTGCCCTAGTGTTCCCCATTGTGGGAATGCCATTCGTGTTGAGGTTGATGAATTTTGCGAGGTTGAATGTGCGTGTGGTCTACAATTCTGTTTCAATTGCTCTTCTGAAGCACACTCACCTTGCTCATGCCGGATGTGGGAGCTTTGGGGCAAGAAGAGCCAGGATGGATCAGAGACGGTTAATTGGATTACAGTCCATACAAAGGCCTGCCCAAAATGTCAAAAACCAGTGGAAAAGAATGGCGGTTGCAACCTAGTGAGTTGTATATGTGGACAATCATTTTGTTGGCTGTGTGGTGGTGCCACTGGTAGAGACCATACATGGACAAATATCACTGGTCACAGTTGTGGGCGATATAAAGAAGAGGATGTGAACAAATTGGAGCATGCAAAAAGGGAGCTCTCACGTTATGTTCACTATCATGATCGATACAAAGCTCACACGGATTCTTTTAAGCTTGAAATTAAGCTGAAGGAAACCATACAGGAAAATATATCAAAACTGGAAGAAAGGGATTCAGCATTCAAAGATTTCAGTTGGCTTACAAGTGGACTTAACAGGCTCTTCAGGTCGAGGCGGGTTCTCTCATATTCCTACCCGTTTGCATTTTTCATGTTCGGTGACCTGTTCAATAATGAAATGACCGAGGCAGAAAAGGAAATAAAACAACACTTGTTTGAAGAACAACAGCAACAGCTTGAGGCAAATATTGAGAAGCTTTCATTATTCATAGAGGAGCCATTTCATCAGTACACGGAGGACAAAGTTGCAGAAACAAGAATGAAAATTATGAATATGTCTGCAATCACTGATAACCTCTGCAAAAAGATGTATGAGTGCATTGAGAATGATTTGTTGGGTCCCCTCCAGCAGGCAATTCATATTATAGCTCCTTATAAATCAAAAGGTGTGGAGAAAGCGTCAGAACTTCCGCTTTGTTGGGGGCCCAATGCTGGTGATTCTAGCATAAATGTGGAAGCAAATTTGAAGATAAATAAGACCAAAACGTCTTTCAAGAGCTACTGA 1668 42.09 MGDYISSEDEYYNDYNDDDRDSLDGYQHFRFEGGCQNESATSSKVITKESLLTAQKEDLHRVMDLLPLGEHHARSLLIHCRWDVERVLAVLVEKGKEQLYADAGVTVVEHDDLSLSKFSSPLTCNICVDDVSTNEMTIMDCGHYFCNNCWTGYFIVKINDGQSRRIRCMAYKCNAICDEAKIRKLVSARDPNLAERFDRFLLESYIEDNRRVKWCPSVPHCGNAIRVEVDEFCEVECACGLQFCFNCSSEAHSPCSCRMWELWGKKSQDGSETVNWITVHTKACPKCQKPVEKNGGCNLVSCICGQSFCWLCGGATGRDHTWTNITGHSCGRYKEEDVNKLEHAKRELSRYVHYHDRYKAHTDSFKLEIKLKETIQENISKLEERDSAFKDFSWLTSGLNRLFRSRRVLSYSYPFAFFMFGDLFNNEMTEAEKEIKQHLFEEQQQQLEANIEKLSLFIEEPFHQYTEDKVAETRMKIMNMSAITDNLCKKMYECIENDLLGPLQQAIHIIAPYKSKGVEKASELPLCWGPNAGDSSINVEANLKINKTKTSFKSY* 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10026698 10031929 - Vvi18g871 Vvi18g871 780574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g871 555 Pfam IBR domain, a half RING-finger domain 275 315 IPR002867 -
Vvi18g871 555 Pfam IBR domain, a half RING-finger domain 195 257 IPR002867 -
Vvi18g871 555 CDD RING-HC_RBR_TRIAD1_like 124 173 - -
Vvi18g871 555 Pfam Ariadne domain 334 543 IPR045840 -
Vvi18g871 555 SMART ibrneu5 195 257 IPR002867 -
Vvi18g871 555 SMART ibrneu5 261 330 IPR002867 -
Vvi18g871 555 SUPERFAMILY RING/U-box 195 263 - -
Vvi18g871 555 ProSiteProfiles Zinc finger RING-type profile. 124 172 IPR001841 -
Vvi18g871 555 SUPERFAMILY RING/U-box 267 323 - -
Vvi18g871 555 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 7 511 - -
Vvi18g871 555 Pfam Zinc finger, C3HC4 type (RING finger) 124 153 IPR018957 GO:0046872
Vvi18g871 555 Gene3D - 253 500 - -
Vvi18g871 555 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 7 511 IPR031127 GO:0004842|GO:0016567
Vvi18g871 555 SUPERFAMILY RING/U-box 120 207 - -
Vvi18g871 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 208 IPR013083 -
Vvi18g871 555 ProSiteProfiles TRIAD supradomain profile. 120 334 IPR044066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g871 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - vvi:100243709 1101.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g544 Vvi18g871 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g871 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi3g544 ECH 165 590 ARIADNE family AT4G34370 71.4 3.3e-180 628.2
Vvi18g871 ECH 169 534 ARIADNE family AT4G34370 67.0 1.0e-149 526.9
Vvi3g544 ECH 59 528 ARIADNE family AT2G16090 76.9 1.8e-219 758.8
Vvi18g871 ECH 63 523 ARIADNE family AT2G16090 68.3 8.5e-193 670.2
Vvi3g544 ECH 26 520 ARIADNE family AT3G27710 61.8 3.3e-182 635.2
Vvi18g871 ECH 41 523 ARIADNE family AT3G27710 59.5 3.5e-171 598.6
Vvi3g544 ECH 45 520 ARIADNE family AT3G27720 53.8 3.4e-141 498.8
Vvi5g1195 . 1 486 ARIADNE family AT1G05890 72.8 1.3e-224 776.2
Vvi5g1195 . 1 515 ARIADNE family AT1G65430 74.9 8.2e-248 853.2
Vvi5g1195 . 2 400 ARIADNE family AT2G31780 58.6 1.9e-146 516.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46