Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g871 ATGGGGGACTACATCAGCAGCGAGGATGAGTACTATAATGATTATAACGATGATGATCGGGACTCTTTGGATGGGTACCAGCACTTTCGTTTTGAGGGTGGGTGCCAGAATGAGAGTGCGACATCCAGTAAGGTAATTACAAAGGAATCTCTTTTGACAGCACAGAAGGAAGATTTGCATAGAGTAATGGACCTGCTACCATTGGGGGAACACCATGCTAGAAGCTTACTTATTCATTGTCGTTGGGATGTTGAAAGGGTGTTGGCAGTCCTTGTGGAGAAGGGAAAAGAACAGCTATATGCTGATGCGGGTGTGACAGTGGTGGAGCATGATGATCTTTCCTTGTCAAAGTTTTCATCTCCATTAACATGCAATATCTGCGTTGACGATGTATCTACTAACGAGATGACAATAATGGACTGTGGCCACTACTTTTGTAACAATTGCTGGACGGGGTATTTTATTGTGAAGATAAATGATGGTCAGAGTAGACGCATTAGGTGCATGGCATACAAGTGCAATGCTATTTGTGATGAAGCAAAAATCAGAAAGCTAGTAAGTGCAAGAGATCCTAATCTGGCAGAGAGATTCGATCGTTTTCTTTTGGAATCATACATTGAGGATAATAGAAGGGTGAAATGGTGCCCTAGTGTTCCCCATTGTGGGAATGCCATTCGTGTTGAGGTTGATGAATTTTGCGAGGTTGAATGTGCGTGTGGTCTACAATTCTGTTTCAATTGCTCTTCTGAAGCACACTCACCTTGCTCATGCCGGATGTGGGAGCTTTGGGGCAAGAAGAGCCAGGATGGATCAGAGACGGTTAATTGGATTACAGTCCATACAAAGGCCTGCCCAAAATGTCAAAAACCAGTGGAAAAGAATGGCGGTTGCAACCTAGTGAGTTGTATATGTGGACAATCATTTTGTTGGCTGTGTGGTGGTGCCACTGGTAGAGACCATACATGGACAAATATCACTGGTCACAGTTGTGGGCGATATAAAGAAGAGGATGTGAACAAATTGGAGCATGCAAAAAGGGAGCTCTCACGTTATGTTCACTATCATGATCGATACAAAGCTCACACGGATTCTTTTAAGCTTGAAATTAAGCTGAAGGAAACCATACAGGAAAATATATCAAAACTGGAAGAAAGGGATTCAGCATTCAAAGATTTCAGTTGGCTTACAAGTGGACTTAACAGGCTCTTCAGGTCGAGGCGGGTTCTCTCATATTCCTACCCGTTTGCATTTTTCATGTTCGGTGACCTGTTCAATAATGAAATGACCGAGGCAGAAAAGGAAATAAAACAACACTTGTTTGAAGAACAACAGCAACAGCTTGAGGCAAATATTGAGAAGCTTTCATTATTCATAGAGGAGCCATTTCATCAGTACACGGAGGACAAAGTTGCAGAAACAAGAATGAAAATTATGAATATGTCTGCAATCACTGATAACCTCTGCAAAAAGATGTATGAGTGCATTGAGAATGATTTGTTGGGTCCCCTCCAGCAGGCAATTCATATTATAGCTCCTTATAAATCAAAAGGTGTGGAGAAAGCGTCAGAACTTCCGCTTTGTTGGGGGCCCAATGCTGGTGATTCTAGCATAAATGTGGAAGCAAATTTGAAGATAAATAAGACCAAAACGTCTTTCAAGAGCTACTGA 1668 42.09 MGDYISSEDEYYNDYNDDDRDSLDGYQHFRFEGGCQNESATSSKVITKESLLTAQKEDLHRVMDLLPLGEHHARSLLIHCRWDVERVLAVLVEKGKEQLYADAGVTVVEHDDLSLSKFSSPLTCNICVDDVSTNEMTIMDCGHYFCNNCWTGYFIVKINDGQSRRIRCMAYKCNAICDEAKIRKLVSARDPNLAERFDRFLLESYIEDNRRVKWCPSVPHCGNAIRVEVDEFCEVECACGLQFCFNCSSEAHSPCSCRMWELWGKKSQDGSETVNWITVHTKACPKCQKPVEKNGGCNLVSCICGQSFCWLCGGATGRDHTWTNITGHSCGRYKEEDVNKLEHAKRELSRYVHYHDRYKAHTDSFKLEIKLKETIQENISKLEERDSAFKDFSWLTSGLNRLFRSRRVLSYSYPFAFFMFGDLFNNEMTEAEKEIKQHLFEEQQQQLEANIEKLSLFIEEPFHQYTEDKVAETRMKIMNMSAITDNLCKKMYECIENDLLGPLQQAIHIIAPYKSKGVEKASELPLCWGPNAGDSSINVEANLKINKTKTSFKSY* 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10026698 10031929 - Vvi18g871 Vvi18g871 780574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g871 555 Pfam IBR domain, a half RING-finger domain 275 315 IPR002867 -
Vvi18g871 555 Pfam IBR domain, a half RING-finger domain 195 257 IPR002867 -
Vvi18g871 555 CDD RING-HC_RBR_TRIAD1_like 124 173 - -
Vvi18g871 555 Pfam Ariadne domain 334 543 IPR045840 -
Vvi18g871 555 SMART ibrneu5 195 257 IPR002867 -
Vvi18g871 555 SMART ibrneu5 261 330 IPR002867 -
Vvi18g871 555 SUPERFAMILY RING/U-box 195 263 - -
Vvi18g871 555 ProSiteProfiles Zinc finger RING-type profile. 124 172 IPR001841 -
Vvi18g871 555 SUPERFAMILY RING/U-box 267 323 - -
Vvi18g871 555 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 7 511 - -
Vvi18g871 555 Pfam Zinc finger, C3HC4 type (RING finger) 124 153 IPR018957 GO:0046872
Vvi18g871 555 Gene3D - 253 500 - -
Vvi18g871 555 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 7 511 IPR031127 GO:0004842|GO:0016567
Vvi18g871 555 SUPERFAMILY RING/U-box 120 207 - -
Vvi18g871 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 208 IPR013083 -
Vvi18g871 555 ProSiteProfiles TRIAD supradomain profile. 120 334 IPR044066 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g544 Vvi18g871 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g871 K11968 - vvi:100243709 1101.66