Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g872 ATGGCAATTTCCATGTCCTCCCTTACATCTTCACTCTCGTCTCTTTCATTTTCTTCCCATATTTCTCAAAGACCCTCTTCACTCTCCTTTGTCCGCTCCAATTCTCTTTCCATTTCCCATCTGACCAAAACCTCTTCACTGGCCGTCGTTGCCTCCGCTGCTGCGGTTGCTTCGCCGCTTGAATTGGAGACAGCAGACTTGAAGAAATACGTCAAATCAAGGCTTCCCGGTGGCTTCGCCGCGCAAACAATCATCGGTACTGGTCGCCGAAAATGCGCCATTGCTCGAGTCGTTCTTCAGGAAGGCACTGGCAAAGTTATTATCAATTACCGTGACGCCAAGGAGTATCTTCAAGGCAATCCATTATGGCTTCAGTACGTCAAAGTTCCGTTGGTAACTTTGGGGTATGAAAGTAGTTATGATGTGTTTGTTAAAGCTCATGGTGGTGGCCTCTCTGGTCAGGCTCAGGCCATCTCCCTTGGCATTGCCCGGGCATTGCTCAAGGTGAGTGAAGACCACAGGGGGCCACTTAGAAAGGAAGGACTCCTAACAAGGGACTCAAGAGTGGTTGAAAGGAAGAAAGTGGGTCTCAAGAAAGCTCGCAAAGCCCCACAGTTTTCGAAACGTTGA 630 49.05 MAISMSSLTSSLSSLSFSSHISQRPSSLSFVRSNSLSISHLTKTSSLAVVASAAAVASPLELETADLKKYVKSRLPGGFAAQTIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYESSYDVFVKAHGGGLSGQAQAISLGIARALLKVSEDHRGPLRKEGLLTRDSRVVERKKVGLKKARKAPQFSKR* 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10033199 10037422 - Vvi18g872 Vvi18g872 780575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g872 209 ProSitePatterns Ribosomal protein S9 signature. 148 166 IPR020574 GO:0003735|GO:0005840|GO:0006412
Vvi18g872 209 PANTHER 28S RIBOSOMAL PROTEIN S9, MITOCHONDRIAL 62 209 - -
Vvi18g872 209 SUPERFAMILY Ribosomal protein S5 domain 2-like 83 209 IPR020568 -
Vvi18g872 209 Pfam Ribosomal protein S9/S16 88 209 IPR000754 GO:0003735|GO:0005840|GO:0006412
Vvi18g872 209 Gene3D - 75 209 IPR014721 -
Vvi18g872 209 PANTHER RIBOSOMAL PROTEIN S9 62 209 IPR000754 GO:0003735|GO:0005840|GO:0006412
Vvi18g872 209 Hamap 30S ribosomal protein S9 [rpsI]. 79 209 IPR023035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g872 K02996 RP-S9, MRPS9, rpsI; small subunit ribosomal protein S9 - vvi:100248841 363.614
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g872 Blo01g01549 . Bda01g00550 . Bpe02g00408 . . Bma01g02299 . . Cma01g01885 . Car01g01469 . . . . . . . . . . . . . . . . . . . Cone7ag1794 . . Lsi04g01634 Csa03g04178 Chy04g00540 . . . . . . . . . . Cmo01g01948 . . . . . . Cpe02g00146 . . . . . . . Cla05g01967 Cam05g2118 Cec05g2129 Cco05g2181 Clacu05g2106 Cmu05g1982 Cre05g2101 . . . Cme04g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009850 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 3 1 33