Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g874 ATGGATATGGAGCTGGATAAGATCAGCAACTTGCCAGGACATATTATAGATAAAATTTTGTCACTGTTGTCAATTAGGGATGCTGTGAGGATGAGTGTCTTGTCAAGCAAGTGGAGAACCCCTATCAGAGAATTCATACTTGAAATATGGAAGGGTCAACACTACAAGCTACCTTCTTGCTTATACAATTGCCAAAGTTTGATTCATTTAGAGCTATTTAATTCTTTGCTAAAGCCTCCTCCAACGTTCAAAGGATTCATGAGCTTGAAGAGCCTTGATCTTCAGCATATTATCATGGCCCAAGATGCATTTGAAAATCTGATTTCTAGCTGCCCTCTGCTTGAGAAGTTTACATTGATGAACTTTGATGGTTTCACCCACCTTAATATTCATGCTCCAAATCTCCAATTCTTTGACACTGGAGGTGTGTTTTATGATGTTAATTTCAAGAATACCTTCCTTTTAGCTACAGTTTCCATTGGCTTGTATGTGGATATAACAAATGATAAAAATTTGGCTGATGGAAATTCTAGAAATTTGGTCAAGTTTTTTGCCCATCTCCCCCGTATCCAGAGGCTTGAGATACAGAGTTATTTTCTAAAGTATTTAGCTGCTGGCAATGTGCCAGGGAAGCTGCCTGCTCCATGTATTGATCTGACTCATCTTTCCATACGCATAAACTTCAGTTCTGTGGAGGAGAATTTAACTGCTCTTTGCCTCCTAAGAAGTTCCCCTAATCTACAAGAACTAGAAATGTTGGCTCGGCCAGAGGAACAAACTCTTCTGGAAACATCCACAACCCTTTGGAAAAAAGAACACTGGAATTACTCCTTTGCCCACCTGCGGGTTGTGAAATTAACTGGCATCTCAGGTGTTGGACCCCAATTGGATTTCATCAACTTTCTGCTTGCATACTCACCTGTGCTTGAGAAGATGACTGTTAAACCTGCTTCTGGGGACGGAGCATGGGAGTTGATAAAGGACTTGCTGCGCTTCCGACGGGCTTCAGTTCGAGCAGAAATCATTTACTTGGATCCCTGA 1041 41.21 MDMELDKISNLPGHIIDKILSLLSIRDAVRMSVLSSKWRTPIREFILEIWKGQHYKLPSCLYNCQSLIHLELFNSLLKPPPTFKGFMSLKSLDLQHIIMAQDAFENLISSCPLLEKFTLMNFDGFTHLNIHAPNLQFFDTGGVFYDVNFKNTFLLATVSIGLYVDITNDKNLADGNSRNLVKFFAHLPRIQRLEIQSYFLKYLAAGNVPGKLPAPCIDLTHLSIRINFSSVEENLTALCLLRSSPNLQELEMLARPEEQTLLETSTTLWKKEHWNYSFAHLRVVKLTGISGVGPQLDFINFLLAYSPVLEKMTVKPASGDGAWELIKDLLRFRRASVRAEIIYLDP* 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10047420 10049442 - Vvi18g874 Vvi18g874 780577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g874 346 SMART 9598neu4hmm 275 344 IPR006566 -
Vvi18g874 346 PANTHER F-BOX PROTEIN-LIKE 1 39 - -
Vvi18g874 346 PANTHER F-BOX PROTEIN-LIKE 41 312 - -
Vvi18g874 346 Pfam Leucine Rich Repeat 88 112 IPR013101 -
Vvi18g874 346 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 41 312 - -
Vvi18g874 346 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 1 39 - -
Vvi18g874 346 Gene3D Ribonuclease Inhibitor 20 286 IPR032675 -
Vvi18g874 346 ProSiteProfiles F-box domain profile. 5 53 IPR001810 GO:0005515
Vvi18g874 346 SUPERFAMILY F-box domain 5 45 IPR036047 GO:0005515
Vvi18g874 346 SUPERFAMILY RNI-like 48 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g874 - - - vvi:100260820 620.542
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g874 . Blo12g00916 . Bda03g00248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019326 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 4