Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g877 ATGCTTGATGAGGCACGTCCAACGGGCTGGAAACTGTTAGGAAATCCAATGATTTCTATCATAGTGGATAGTAGATATAACCATTACTGCGAGCAAATACAAGTGGTGGTAAACTCATTTGATTCGAAGATGGGTTTTGGAGCAGCAAATCCTTACACGACCCTAGCTCGAAAGGCAATGTCAAGGCACTTCAGATGCATGAAGGATGCGATATTGGCGCAATTGAAGATTTCATGTGAATTACTTGGGGAGAAAGATGTCATGGCGGCATCTGGATTGAGTAAAGGAGAGACACCAAGATTACGGTTGCTTGATCAAAGCCTGAGGCAGCAAAGAGCCCTTCATCAAATGGGGATGATGGAGCCAGAAGCATGGAGGCCCCAGCGAGGCTTGCCTGAGCGATCTGTCAACATTTTGAGAGCCTGGCTTTTTGAGCATTTCCTGCACCCGTACCCAAGCGACGCAGATAAGCATTTGTTGTCTCGCCAGACTGGTTTATCCAGAAATCAGGTCTCGAACTGGTTCATTAATGCAAGGGTTCGATTGTGGAAACCCATGGTGGAGGAGATGTACCAACAAGATGCCAAGGAAGAAGAAGCCGCTGCATCATCTGAGGATAGAGAAGCCAACCCACAAAATCACCAGAAAAACAGCATCTCCGCACAAACACCAAGGTCTTCCACTCCACCAGCGTCCCAAAGATCCCAAATCAATGCTCAGGAAAACGACCCTTCACTCGACACCATCAATTACAGGAATTGCTTCTCGGGAACCCAAGCAATTACTCAAGCTACCACCACCACCACCACCACCACCACCACCATATCTCAACGTTTTCCGACCACCCATGAAGCCGGCATGCATCAACGGACGGTGGCCGCTGATGACACGTGGTGTCGAGGAAGCGTGTTTGGCGGTGAATATGGGACCACTGATGCCGCATCTCTAGGGACACCCGCTGGTGATGTCTCCCTTACCTTGGGCCTTCGACACGCCGGGAACTTGCCGGACAAGGGCCGGCTGTCGTTACGGGACTTCGGGGCCTGCTGA 1050 50.48 MLDEARPTGWKLLGNPMISIIVDSRYNHYCEQIQVVVNSFDSKMGFGAANPYTTLARKAMSRHFRCMKDAILAQLKISCELLGEKDVMAASGLSKGETPRLRLLDQSLRQQRALHQMGMMEPEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLSRQTGLSRNQVSNWFINARVRLWKPMVEEMYQQDAKEEEAAASSEDREANPQNHQKNSISAQTPRSSTPPASQRSQINAQENDPSLDTINYRNCFSGTQAITQATTTTTTTTTTISQRFPTTHEAGMHQRTVAADDTWCRGSVFGGEYGTTDAASLGTPAGDVSLTLGLRHAGNLPDKGRLSLRDFGAC* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10068355 10074521 - Vvi18g877 Vvi18g877 780580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g877 349 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 4 1 293 - -
Vvi18g877 349 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 293 - -
Vvi18g877 349 SUPERFAMILY Homeodomain-like 126 192 IPR009057 -
Vvi18g877 349 Pfam Homeobox KN domain 142 181 IPR008422 GO:0003677|GO:0006355
Vvi18g877 349 Gene3D - 128 190 - -
Vvi18g877 349 MobiDBLite consensus disorder prediction 193 250 - -
Vvi18g877 349 Pfam Associated with HOX 2 71 IPR006563 -
Vvi18g877 349 MobiDBLite consensus disorder prediction 213 250 - -
Vvi18g877 349 SMART prehox3 1 73 IPR006563 -
Vvi18g877 349 CDD homeodomain 125 186 IPR001356 GO:0003677
Vvi18g877 349 MobiDBLite consensus disorder prediction 193 212 - -
Vvi18g877 349 ProSiteProfiles 'Homeobox' domain profile. 122 185 IPR001356 GO:0003677
Vvi18g877 349 SMART HOX_1 125 189 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g900 Vvi18g877 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14366 PF07526 POX 9.10E-23 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g877 - - vvi:100243714 626.32