Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g88 ATGGGAAAAGTAGCGGAGATGAAGAAGAAGAAGAAAGGACGCCCCTCTCTCTTAGATCTCCAAAAACGCAGTCTCATAGAACAAGAGCAACAGCCACAAAACCCTAACTTGAAAAACCCTAATTTTCCTAATCCAAATCCTAACTCAACACGTCGATCCACTCGCCGGAGCGCCAAAGTCGACGAAATTTTGCCGGCGCCAGACTGGATTGAAGGCGTCGGAGACGACGATGACGAGCGCAAAGAGAAGAAGCTTAAGCTCCTTCGCCGCTTGTCTCCGAATCATACGCAAAATCCTGGATCTTTGCCGAATTCCGTGTCTTTGCACTCGGTTTCGTACGCTTCAAATTCGAATGCGGATGTTGAGAATCCCGAGGCGTCTCTCAAGAAGCGGAAGATCAATGCCGTTGGTGACGGATCTGGCCACACCACTGCCGAAAAGGAAGAAAAGGTTGCGAAAGCGACTGATACTCCACAAGGGTCGAGGTTGGAATCCGGCCCCACGACACCTTTGCCAGACAAAAAGTTGTTGGTGTTCATTCTTGATAGACTTCAAAAAAAAGACACCCATGGTGTGTTCTTGGAGCCAGTGGATCCGGAAGAGCTTCCCGATTACCATGACATCATAGAGCATCCCATGGATTTTGGAACTGTGAGGAAGAAACTAGATGGGGGACTTTATTCCAACTTGGAACAATTTGAGAGCGATATTTTCTTAATATGTTCGAATGCAATGCAGTATAATGCACCAGATACTGTGTACTTTCGACAGGCACGAACGATACAAGAACTAGCAAAGAGGGACTTTGCAAATTTGAGGCAAGAAGGTGATGATGGCGAGCCACAACCCAAAATTGTCAGGAGAGGCAGGCCACCAACCAAGCACCTGAAGAAATCTCTTGGAAGTTCTCCCTTAGAGCATGTTGCACCTGAGACATCCTCTGAAGCGACTCTTGCTACTGGGGGAGATAATTCCATCTCATCTAACTCCTACAATCTAAGGAAAGGACCTACTCCATGCAAGTTTCGACCGGCAGACATATCAGTGAAGGCCCAATATGGGTCCCGCAACAGTGACAATTATTCTAGCTGGTTGTCTGAATGGAATAATGAATTTCCAGCTTCCATTTTGAAGGGAGTTTCCACGAAGCATGGCAAGAAACCTTTTGAATTAGATGAAAATAGGCGTGATACCTATAAGCATCCATTGGCTTCCAACCATGAGCCATCAGTGTTGACTACCCTCCATGGAGAATTGAAGCAACTGATGTCGGTAGGTCTACACTCGGACCATGGTTATGCAAGAAGCCTCGCTCGATTTGCTGCAGATCTTGGGCAAGATGTTTGGAAAATTGCTGCCAAGAAAATTGCCAATGTTTTGCCTGTTGGAGTTGAGTTTGGTCCTGGATGGGTGGGAGAAAATGAGGCATTAGCACAGCGGCCATCTCTGTTGTGTGAGAATCAGAAATCTTCAAACAACTCAACACCACCACATCCACAGCCCCCACCTACTACTTCTGGTTCAAGTCTGTTTGTTGCAAACAGATCATCTCTCCCTTGTAAAGAAGAGTCAGGGGAAGCTGTCAGAGGATTAAATTCCCAAATCGAGTTAACTTCAAGACCTGCTCCTCCTGAAATTCACCAAACGCTTGGAATTCACCCTGGTTTGAATGGTTTCAGTGGTGGGTTTGGGTTCAATCCTTCATCCCAAATGGGAATGGCCAGACTGGCCATGCTAGCAGGGAATTCCAGTACTGAATCAATGCCATCTCAAAAGCTTGGCATGGGATTACCACAACGGATTCCACCCGACCTCAATGTCAGATTCCAGGCACCAGGCTCACCCAGCTCCAGCACCACGCCCATTGCTTCATCACAACAGCCAGATTTAGCCTTGCAGCTGTGA 1905 47.14 MGKVAEMKKKKKGRPSLLDLQKRSLIEQEQQPQNPNLKNPNFPNPNPNSTRRSTRRSAKVDEILPAPDWIEGVGDDDDERKEKKLKLLRRLSPNHTQNPGSLPNSVSLHSVSYASNSNADVENPEASLKKRKINAVGDGSGHTTAEKEEKVAKATDTPQGSRLESGPTTPLPDKKLLVFILDRLQKKDTHGVFLEPVDPEELPDYHDIIEHPMDFGTVRKKLDGGLYSNLEQFESDIFLICSNAMQYNAPDTVYFRQARTIQELAKRDFANLRQEGDDGEPQPKIVRRGRPPTKHLKKSLGSSPLEHVAPETSSEATLATGGDNSISSNSYNLRKGPTPCKFRPADISVKAQYGSRNSDNYSSWLSEWNNEFPASILKGVSTKHGKKPFELDENRRDTYKHPLASNHEPSVLTTLHGELKQLMSVGLHSDHGYARSLARFAADLGQDVWKIAAKKIANVLPVGVEFGPGWVGENEALAQRPSLLCENQKSSNNSTPPHPQPPPTTSGSSLFVANRSSLPCKEESGEAVRGLNSQIELTSRPAPPEIHQTLGIHPGLNGFSGGFGFNPSSQMGMARLAMLAGNSSTESMPSQKLGMGLPQRIPPDLNVRFQAPGSPSSSTTPIASSQQPDLALQL* 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 821287 826998 + Vvi18g88 Vvi18g88 779791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g88 634 MobiDBLite consensus disorder prediction 1 168 - -
Vvi18g88 634 SMART bromo_6 166 274 IPR001487 GO:0005515
Vvi18g88 634 PANTHER BROMODOMAIN CONTAINING PROTEIN 6 587 - -
Vvi18g88 634 PANTHER BROMODOMAIN CONTAINING PROTEIN 579 634 - -
Vvi18g88 634 CDD Bromodomain 173 269 - -
Vvi18g88 634 MobiDBLite consensus disorder prediction 23 53 - -
Vvi18g88 634 MobiDBLite consensus disorder prediction 124 155 - -
Vvi18g88 634 Gene3D - 139 283 IPR036427 GO:0005515
Vvi18g88 634 ProSitePatterns Bromodomain signature. 190 247 IPR018359 -
Vvi18g88 634 SUPERFAMILY Bromodomain 157 276 IPR036427 GO:0005515
Vvi18g88 634 MobiDBLite consensus disorder prediction 272 287 - -
Vvi18g88 634 MobiDBLite consensus disorder prediction 306 332 - -
Vvi18g88 634 MobiDBLite consensus disorder prediction 610 634 - -
Vvi18g88 634 Pfam Bromodomain 180 259 IPR001487 GO:0005515
Vvi18g88 634 ProSiteProfiles Bromodomain profile. 185 255 IPR001487 GO:0005515
Vvi18g88 634 PRINTS Bromodomain signature 188 201 IPR001487 GO:0005515
Vvi18g88 634 PRINTS Bromodomain signature 202 218 IPR001487 GO:0005515
Vvi18g88 634 PRINTS Bromodomain signature 218 236 IPR001487 GO:0005515
Vvi18g88 634 PRINTS Bromodomain signature 236 255 IPR001487 GO:0005515
Vvi18g88 634 PANTHER BROMODOMAIN-CONTAINING PROTEIN 9-LIKE 579 634 - -
Vvi18g88 634 PANTHER BROMODOMAIN-CONTAINING PROTEIN 9-LIKE 6 587 - -
Vvi18g88 634 MobiDBLite consensus disorder prediction 272 332 - -
Vvi18g88 634 MobiDBLite consensus disorder prediction 486 511 - -
Vvi18g88 634 MobiDBLite consensus disorder prediction 606 634 - -
Vvi18g88 634 MobiDBLite consensus disorder prediction 91 123 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g88 K22184 BRD9; bromodomain-containing protein 9 - vvi:100244510 1087.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g294 Vvi18g88 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g88 . . . Bda03g00322 . Bpe04g00283 Bma04g00289 . . . Cma01g02019 . Car01g01587 . . . . . . . . . . . . . . . . . . Cone4ag2023 Cone7ag1940 . . Lsi04g01811 Csa04g02708 . . . . . . . . . . Sed13g2199 Cmo01g02077 . . . . . . Cpe02g00031 Bhi09g02875 Tan01g5115 Cmetu07g1520 . Hepe01g2345 Mch11g0053 . Cla11g01827 Cam11g1894 Cec11g1919 Cco11g1927 Clacu11g2058 Cmu11g1863 Cre11g2270 . . Chy07g00397 Cme07g00050
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011763 1 1 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 26