Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g881 | ATGCCTATTGTCCGCCAACCACTTGCCATCTCCCGCATCTGCCGTCTCGTGCTTCTCCGCCGTTGCAATGCCATCTCCAAACTTAATTTCGTCTTCTCTGACGATATCGTCGACGCTGTTCTCCGGAACCTCAGACTAAACCCTACTGCTTCTCTAGGGTTTTTCCAATTTGTTTCTAAGCAGCAAAATTTTAGACCCAACGTTAAGTCTTATTGTAAGCTTGTTCATATATTGTCCAGAGGTCGAATGTATGATGAGACCAGAGCGTACTTGAACCAGCTCGTTGATCTTTGTAAGTTCAAGGATCGTGGCAATGTGATTTGGGATGAATTAGTTGGGGTTTATCGAGAATTTGCATTTTCGCCCACTGTTTTTGATATGATTCTGAAGGTGTATGTGGAAAAGGGTTTGACAAAGAATGCATTGTACGTGTTTGATAATATGGGCAAGTGTGGCCGAATACCAAGCTTGCGGTCTTGCAATAGTTTGTTGAACAATTTGGTTAAAAATGGGGAGACCCACACGGCACATTATGTTTATCAGCAAATGATCAGGGTTGGAATAGTTCCGGACGTTTTTATGGTTTCAATAATGGTGAATGCATTTTGCAAGGACGGGAAAGTGGATGAAGCAGCGGGATTTGTGAAAAAAATGGAGAATTTGGGTGTTGAACCAAATATAGTGACCTACCATAGTTTGATTAATGGCTATGTTAGTCTGGGGGATGTGGAAGCTGCAAAAGGAGTGCTGAAATTCATGAGTGAAAAGGGGGTTTCAAGAAATGTGGTTACATATACCCTGTTGATCAAGGGTTATTGCAAACAATGTAAAATGGACGAGGCAGAGAAGGTGCTTAGAGGAATGCAGGAGGAGGCAGCTTTGGTTCCTGATGAGCGTGCTTATGGTGTCTTGATAGATGGTTATTGTCGAACTGGAAAAATAGATGATGCTGTTAGGCTTTTGGATGAGATGTTGAGATTGGGCCTGAAAACAAACTTATTTATTTGTAATTCATTGATTAATGGATATTGCAAACGTGGTGAAATTCATGAAGCAGAGGGAGTGATAACCCGTATGGTGGATTGGAACTTGAAGCCAGACTCTTATAGCTACAATACTCTACTGGATGGGTACTGTAGAGAAGGCCATACATCTGAAGCTTTCAACCTTTGTGACAAGATGCTTCAGGAAGGGATTGAACCAACCGTCTTAACTTATAATACTCTTCTTAAAGGCTTGTGCCGTGTGGGTGCCTTTGATGATGCTTTGCAAATTTGGCATTTGATGATGAAAAGGGGTGTGGCTCCTGATGAGGTTGGCTATAGTACTCTGCTTGATGGGTTATTCAAGATGGAAAATTTTGAAGGAGCTTCAACATTGTGGAAAGATATTCTAGCAAGAGGATTTACGAAAAGTAGGATTACTTTCAATACAATGATCAGCGGATTATGTAAGATGGGGAAAATGGTTGAAGCGGAGGAAATTTTTGACAAGATGAAGGATCTGGGATGTTCCCCTGATGGAATAACATACAGAACCCTAATTGATGGGTATTGTAAAGCCAGCAATGTTGGACAAGCTTTTAAAGTTAAGGGTGCCATGGAAAGGGAACCAATTTCACCTTCCATTGAGATGTACAATTCTCTTATTAGTGGACTTTTTAAGTCTAGGAGATTAGTTGAAGTGACAGATCTTCTCACTGAGATGGGCATAAGGGGATTGACCCCAAATATTGTTACTTATGGAGCCCTTATTGATGGTTGGTGCAAAGAAGGGATGCTGGATAAAGCTTTTAGTTCATATTTTGAGATGACTGAGAATGGGCTATCTGCCAATATAATTATATGCAGCACAATGGTCAGTGGCCTATATAGGCTTGGTAGGATTGATGAAGCAAATTTGCTGATGCAGAAAATGGTGGATCATGGTTTTTTTCCTGATCATGAATGTTTCCTCAAGTCTGACATTAGATATGCAGCCATTCAGAAAATTGCAGATTCTCTTGATGAAAGTTGTAAAACTTTTCTTCTACCCAACAATATTGTGTACAATATTGCTATTGCGGGCCTTTGCAAGACTGGGAAGGTTGATGATGCAAGAAGATTTTTCTCTATGTTATCACTGAAAGGATTTGTTCCGGATAATTTTACGTACTGTACCCTGATTCATGGCTATTCTGCGGCTGGTAATGTTGATGAAGCTTTTCGCTTAAGGGACGAGATGCTGAGAAGGGGTCTTGTTCCAAACATAGTTACATACAATGCTCTTATAAATGGCTTGTGCAAATCAGAAAACGTGGATCGAGCACAGAGGCTTTTCCATAAACTTCACCAGAAGGGATTGTTTCCAAATGTTGTTACCTATAATACATTGATCGATGGATATTGCAAGATTGGTAATATGGATGCAGCCTTCAAACTGAAAGATAAAATGATAGAAGAAGGGATTTCTCCTTCTATTCAGTGTAACCTCCTGGAGAGTGTCAGTATGTGGCTAGTTGGTATCCTCCCAAAATCATAA | 2520 | 40.48 | MPIVRQPLAISRICRLVLLRRCNAISKLNFVFSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSIQCNLLESVSMWLVGILPKS* | 840 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 10099743 | 10112854 | + | Vvi18g881 | Vvi18g881 | 780584 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g881 | 839 | Gene3D | Tetratricopeptide repeat domain | 535 | 653 | IPR011990 | GO:0005515 | |
| Vvi18g881 | 839 | Gene3D | Tetratricopeptide repeat domain | 740 | 830 | IPR011990 | GO:0005515 | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 367 | 401 | IPR002885 | - | |
| Vvi18g881 | 839 | SUPERFAMILY | TPR-like | 200 | 365 | IPR011990 | GO:0005515 | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 261 | 295 | IPR002885 | - | |
| Vvi18g881 | 839 | Pfam | PPR repeat family | 369 | 415 | IPR002885 | - | |
| Vvi18g881 | 839 | Pfam | PPR repeat family | 541 | 590 | IPR002885 | - | |
| Vvi18g881 | 839 | Pfam | PPR repeat family | 748 | 797 | IPR002885 | - | |
| Vvi18g881 | 839 | Pfam | PPR repeat family | 225 | 274 | IPR002885 | - | |
| Vvi18g881 | 839 | Pfam | PPR repeat family | 474 | 520 | IPR002885 | - | |
| Vvi18g881 | 839 | Pfam | PPR repeat family | 678 | 725 | IPR002885 | - | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 784 | 818 | IPR002885 | - | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 156 | 190 | IPR002885 | - | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 679 | 713 | IPR002885 | - | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 191 | 225 | IPR002885 | - | |
| Vvi18g881 | 839 | TIGRFAM | PPR: pentatricopeptide repeat domain | 159 | 192 | IPR002885 | - | |
| Vvi18g881 | 839 | TIGRFAM | PPR: pentatricopeptide repeat domain | 751 | 785 | IPR002885 | - | |
| Vvi18g881 | 839 | TIGRFAM | PPR: pentatricopeptide repeat domain | 369 | 403 | IPR002885 | - | |
| Vvi18g881 | 839 | TIGRFAM | PPR: pentatricopeptide repeat domain | 263 | 297 | IPR002885 | - | |
| Vvi18g881 | 839 | TIGRFAM | PPR: pentatricopeptide repeat domain | 579 | 612 | IPR002885 | - | |
| Vvi18g881 | 839 | TIGRFAM | PPR: pentatricopeptide repeat domain | 681 | 714 | IPR002885 | - | |
| Vvi18g881 | 839 | TIGRFAM | PPR: pentatricopeptide repeat domain | 786 | 819 | IPR002885 | - | |
| Vvi18g881 | 839 | TIGRFAM | PPR: pentatricopeptide repeat domain | 335 | 368 | IPR002885 | - | |
| Vvi18g881 | 839 | TIGRFAM | PPR: pentatricopeptide repeat domain | 474 | 507 | IPR002885 | - | |
| Vvi18g881 | 839 | TIGRFAM | PPR: pentatricopeptide repeat domain | 300 | 330 | IPR002885 | - | |
| Vvi18g881 | 839 | TIGRFAM | PPR: pentatricopeptide repeat domain | 441 | 469 | IPR002885 | - | |
| Vvi18g881 | 839 | TIGRFAM | PPR: pentatricopeptide repeat domain | 545 | 577 | IPR002885 | - | |
| Vvi18g881 | 839 | TIGRFAM | PPR: pentatricopeptide repeat domain | 405 | 438 | IPR002885 | - | |
| Vvi18g881 | 839 | TIGRFAM | PPR: pentatricopeptide repeat domain | 509 | 542 | IPR002885 | - | |
| Vvi18g881 | 839 | TIGRFAM | PPR: pentatricopeptide repeat domain | 615 | 647 | IPR002885 | - | |
| Vvi18g881 | 839 | TIGRFAM | PPR: pentatricopeptide repeat domain | 228 | 261 | IPR002885 | - | |
| Vvi18g881 | 839 | TIGRFAM | PPR: pentatricopeptide repeat domain | 716 | 750 | IPR002885 | - | |
| Vvi18g881 | 839 | TIGRFAM | PPR: pentatricopeptide repeat domain | 195 | 227 | IPR002885 | - | |
| Vvi18g881 | 839 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 9 | 800 | - | - | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 297 | 331 | IPR002885 | - | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 542 | 576 | IPR002885 | - | |
| Vvi18g881 | 839 | Gene3D | Tetratricopeptide repeat domain | 393 | 465 | IPR011990 | GO:0005515 | |
| Vvi18g881 | 839 | Gene3D | Tetratricopeptide repeat domain | 654 | 739 | IPR011990 | GO:0005515 | |
| Vvi18g881 | 839 | Gene3D | Tetratricopeptide repeat domain | 466 | 534 | IPR011990 | GO:0005515 | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 714 | 748 | IPR002885 | - | |
| Vvi18g881 | 839 | SUPERFAMILY | HCP-like | 305 | 504 | - | - | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 472 | 506 | IPR002885 | - | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 402 | 436 | IPR002885 | - | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 577 | 611 | IPR002885 | - | |
| Vvi18g881 | 839 | Pfam | PPR repeat | 294 | 324 | IPR002885 | - | |
| Vvi18g881 | 839 | Pfam | PPR repeat | 328 | 360 | IPR002885 | - | |
| Vvi18g881 | 839 | Pfam | PPR repeat | 187 | 219 | IPR002885 | - | |
| Vvi18g881 | 839 | Gene3D | Tetratricopeptide repeat domain | 172 | 276 | IPR011990 | GO:0005515 | |
| Vvi18g881 | 839 | Gene3D | Tetratricopeptide repeat domain | 36 | 171 | IPR011990 | GO:0005515 | |
| Vvi18g881 | 839 | Gene3D | Tetratricopeptide repeat domain | 277 | 383 | IPR011990 | GO:0005515 | |
| Vvi18g881 | 839 | PANTHER | - | 9 | 800 | - | - | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 332 | 366 | IPR002885 | - | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 612 | 646 | IPR002885 | - | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 507 | 541 | IPR002885 | - | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 226 | 260 | IPR002885 | - | |
| Vvi18g881 | 839 | SUPERFAMILY | HCP-like | 583 | 816 | - | - | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 749 | 783 | IPR002885 | - | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 437 | 471 | IPR002885 | - | |
| Vvi18g881 | 839 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 121 | 155 | IPR002885 | - | |
| Vvi18g881 | 839 | Pfam | PPR repeat | 615 | 644 | IPR002885 | - | |
| Vvi18g881 | 839 | Pfam | PPR repeat | 441 | 469 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g881 | - | - | K17964 | vvi:100259083 | 1631.69 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g881 | . | . | . | . | . | . | Bma04g00196 | . | . | . | . | . | Car01g01470 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Chy04g00538 | . | . | . | . | . | . | . | . | . | . | Cmo01g01949 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0009718 | 1 | 2 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 2 | 1 | 1 | 1 | 3 | 1 | 1 | 31 |