Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g886 ATGACGAGTGGGTTTGGGGAATCAACAAGCAGGCCACCCCAAAGCCCTTCTTTCTCTAGCAATAATGGTAGCAACAGTGATGCTGGAATGCCCTGCCAGCGACCTGAAACGGCTCCTCCACCAGATGCAAATCATTTTATGCAACATGGGTTTGGGTTCATGGGAGGCTTAGGGGGATTTGCACCAATGGCAACTGCAAGATTTGGGAACTTCACATTGTCTGCGGCTTTTGGTGGGCTTTTCCCATCGCTATTTAACCTTCAAGTGCATGGATTCCCTGATGCTACCATGTATGGGCCAGCTGCTGGTTTCCCATATGGATTTTCTAATTCATTTCATGGTGGACATGCTCATGGATTCCCTCAGCATCCACCAACTCAAGGGCAACAAGCAGATTACTATCTGAAGATGCTGTTCTTGATGATTGGTGTCTTTGTGATCATTGCCCTAATTTGGTCATAG 462 47.19 MTSGFGESTSRPPQSPSFSSNNGSNSDAGMPCQRPETAPPPDANHFMQHGFGFMGGLGGFAPMATARFGNFTLSAAFGGLFPSLFNLQVHGFPDATMYGPAAGFPYGFSNSFHGGHAHGFPQHPPTQGQQADYYLKMLFLMIGVFVIIALIWS* 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10145976 10147817 - Vvi18g886 Vvi18g886 780589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g886 153 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 32 152 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vvi18g886 153 MobiDBLite consensus disorder prediction 1 31 - -
Vvi18g886 153 PANTHER OS12G0636000 PROTEIN 32 152 - -
Vvi18g886 153 MobiDBLite consensus disorder prediction 1 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g886 K10666 RNF5; E3 ubiquitin-protein ligase RNF5 [EC:2.3.2.27] - vvi:100259073 252.292
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g550 Vvi18g886 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g886 . . Bda01g00547 . Bpe02g00406 . Bma04g00198 Bma01g02302 Cmo05g00227 . . . . . Sed11g1002 . . Bhi04g00282 Tan02g1923 Cmetu03g0100 . Hepe10g0677 . Lcy13g2012 Cla08g01518 Cam08g2009 Cec08g1585 Cco08g1720 Clacu08g1698 . Cre08g1481 Cone4ag1888 Cone7ag1799 Cone17ag1319 Cone20ag0156 . . . Cme03g01984 . . . . . . . . . . . . Cma05g00220 Car05g00180 . Cpe11g00182 . . . . . . . . . . . . . . . Lsi08g01421 Csa02g02021 Chy03g01490 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001146 5 2 2 4 3 2 4 2 2 2 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 2 2 79