Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g889 ATGGCGATATCCCCAAAGCTTTGTCTTCTTCCACTCCTATGTTTGCTAGTGAGCACAGTTTCGGCCACAGTGTTTACCCTTGAGAATCATTGCAGCTACACAATATGGCCTGGAACTTTGTCCGGCAATGGCGCCGCTATCCTCGGGAACGGCGGTTTTGTATTGCCACCTGGTGCATCGATCCAGTTGCAGGCACCATTTGGATGGTCGGGAAGGTTCTGGGCCCGAACTGGATGCAACTTCGACAGCGCCGGCAAGGGTACATGCACCACCGGAGACTACTGCCAGAGGGCCGGTTGTGTGGCTGATCTGAACTCGAACTGCCCGGCGGAGTTGCAGATAACTGATTCAGGTTCGGTGGTTGCATGCAAGAGTGCGTGCGCAGCTTTTAACACGGCCCAGTATTGTTGCACCGGCGACCACAGCACCCCCCAGACATGTTCGCCGACGCAGTACTCGGAGATATTCAAGAAAGCGTGCCCGACGGCGACTCGGAGATGGAAAACATTGGATAAATCGAACTAA 525 54.48 MAISPKLCLLPLLCLLVSTVSATVFTLENHCSYTIWPGTLSGNGAAILGNGGFVLPPGASIQLQAPFGWSGRFWARTGCNFDSAGKGTCTTGDYCQRAGCVADLNSNCPAELQITDSGSVVACKSACAAFNTAQYCCTGDHSTPQTCSPTQYSEIFKKACPTATRRWKTLDKSN* 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10174162 10175673 + Vvi18g889 Vvi18g889 780592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g889 174 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Vvi18g889 174 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Vvi18g889 174 PRINTS Pathogenesis-related protein signature 85 114 IPR001938 -
Vvi18g889 174 PANTHER OS03G0233200 PROTEIN 18 93 IPR001938 -
Vvi18g889 174 PANTHER OS03G0233200 PROTEIN 95 163 IPR001938 -
Vvi18g889 174 SMART tha2 25 165 IPR001938 -
Vvi18g889 174 Gene3D Thaumatin 23 94 IPR037176 -
Vvi18g889 174 Gene3D Thaumatin 95 173 IPR037176 -
Vvi18g889 174 Pfam Thaumatin family 95 164 IPR001938 -
Vvi18g889 174 Pfam Thaumatin family 29 93 IPR001938 -
Vvi18g889 174 PIRSF PR5 94 170 IPR001938 -
Vvi18g889 174 PIRSF PR5 1 94 IPR001938 -
Vvi18g889 174 PANTHER PATHOGENESIS-RELATED PROTEIN 5 18 93 - -
Vvi18g889 174 PANTHER PATHOGENESIS-RELATED PROTEIN 5 95 163 - -
Vvi18g889 174 SUPERFAMILY Osmotin, thaumatin-like protein 24 163 IPR037176 -
Vvi18g889 174 ProSiteProfiles Thaumatin family profile. 22 174 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g889 - - - vvi:100232856 294.664
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g889 . . . . . . . . Cmo05g00228 . . . . . . . . Bhi04g00279 . . . Hepe10g0162 . . . . . . . . . . . . . . . . Cme03g01981 Blo17g00815 Blo18g00825 Bda08g01300 . . Bpe05g00077 Bma01g00772 Bma05g00106 . . . . Cma05g00222 Car05g00183 . Cpe11g00183 . . . . . . . . . . . . . . . Lsi08g01419 Csa02g02024 Chy03g01487 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012457 1 2 2 1 1 1 1 1 1 2 0 1 0 1 1 0 1 0 1 1 1 3 1 1 0 1 0 1 1 1 29