Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g890 ATGGAGGTGAAGTTTAAGTGTAGTTCATGTGCCGTTTCTTCGAGGACGAAGTTTTGGAGCAGGCTCCGATTCGCTGTTGTTTTCGAGCTTGTATTGATATTGGCATGGTTTGAAGCTGCTAATGCAAAATCCCAAGAACACCAACTGCAAGCGCAAGGTGTGGAAAAGGGAAGTAGAAATGTTGTGTCTCATTCCTGCATCCATGACCAGATACTGGAACAAAGGAGGCGGCCAGGTCGCAAAGTGTATTCTGTTACCCCGCAGGTTTATGAGGAATCTGGTATCTCAAAACCCCTTCATGGCAAAGGGAGGGCATTGCTTAGCGTTTCTAAATTTTCAGAGGAGCAAGAGGATGTGAAGGAACCGATTAGAATTTATCTTAATTATGATGCTGTTGGTCATTCTCCTGACAGAGACTGTCGGAATGTTGGTGACATTGTCAAGCTTGGCGAGCCTCCTCTAAGAAGTTCTGTGACTTTTGCTCCTGGCATCCCTTCTTGCAACCCTCATAGTGATCCTCCAATTTTTGGTGACTGCTGGTACAACTGCACTTTGGATGATATAGCTGGTGAAGACAAAAGGCACCGCCTTCGTAAGGCTTTAGGGCAGACGGCAGATTGGTTTAGAAGAGCCTTGGCTGTTGAACCTGTAAAAGGGAATCTGCGGTTGAGTGGATATTCTGCATGTGGACAAGATGGAGGTGTGCAGCTTCCACGTGCATATGTAGAAGAGGGTGTAGCCAATGCAGATTTGGTTCTTTTGGTAACTACCAGACCAACGACTGGGAACACTCTTGCATGGGCAGTGGCATGTGAACGTGATCAGTGGGGTCGTGCAATAGCCGGGCATGTGAATGTTGCTCCTCGTCATTTGACTGCTGAAGCGGAGACCTTGCTTTCAGCTACTCTAATACATGAGGTTATGCATGTTCTCGGCTTTGATCCCCATGCCTTTGCACATTTTCGGGATGAGAGGAAAAGAAGACGTGCTCAGGTCATTGAACAAACTGTTGATGAAAAGCTTGGGCGAACAGTGACACGTGTGGTGCTTCCTCGTGTTGTCATGCACTCACGGTACCATTATGGGGCATTCTCTGAAAATTTTACTGGTTTAGAATTAGAAGATGGAGGAGGACGCGGCACTTCAGGATCTCACTGGGAAAAGAGGCTTCTGATGAATGAGATTATGACAGGCTCAGTGGATACAAGATCCGTTGTTTCGAAAATGACACTAGCTTTATTAGAGGATAGTGGCTGGTATCATGCTAATTATAGTATGGCAGACCGCCTTGATTGGGGCCGCAACCAAGGAACTGAATTTGTTACCTCCCCCTGCAATCTCTGGAAGGGGGCATACCATTGCAACACAACACAGTCATCGGGCTGCACATATAACAGGGAGGCAGAGGGTTACTGCCCAATTGTAAGTTATAGTGGAGACCTCCCTCAGTGGGCCCGTTATTTTCCACAGGCTAACAAAGGTGGGCAATCATCATTGGCCGATTATTGCACTTATTTTGTAGCTTACTCCGATGGATCATGTACAGATACTAACAGTGCTCGAGCACCTGACAGAATGTTGGGTGAAGTGCGAGGAAGTAACTCTAGATGTATGGCCTCATCACTTGTACGAACTGGGTTTGTACGGGGTTCTACAACTCAGGGAAATGGTTGCTATCAGCATAGGTGTATAAACAATACTCTGGAGGTTGCTGTGGATGGTATTTGGAAAGTATGTCCTGAAGCCGGTGGACCAATTCAATTCCCAGGCTTCAATGGTGAGCTAATTTGCCCAGTTTACCATGAACTCTGTAGCAGTGCCCCAGTTCCTGTAGTTGGGCACTGTCCCAATTCATGTGACTTCAATGGAGACTGTGTTGATGGAAGGTGTCATTGCTTTCTTGGGTTTCATGGTCATGATTGTAGTAAACGCTCTTGCCCTAGCAATTGTAATGGACATGGCAAGTGCCTTCCATCTGGGGTCTGTCAATGTGTTAATGGATACACTGGCATCGACTGCTCTACTGCTGTTTGCGATGAACAATGCAGTCTTCATGGAGGGGTCTGTGATAATGGAGTTTGTGAGTTTCGATGTTCTGACTATGCGGGCTACACTTGCCAGAACAGCTCCCTGCTCCTCTCCAGTCTTTCAGATTGCAGAGAGGTATTGGAGAGTGATGCCTCTGGGCAACATTGTGCGCCTAGTGAACCAAGTATTTTGCAGCAGCTAGAAGTGGTTGTTGTTATGCCCAACTATCGTCGGCTGTTCCCAAGTGTTGCTAGGAAGGTTTTTAATTTCTTTATCAGTGGGTACTGTGATGCAGCTGCTAAACGGCTAGCCTGCTGGATCTCGATCCAAAAGTGTGACAAGGATGGTGACAATAGGCTTCGGGTATGCCATTCAGCATGTCAGTCTTACAACTTGGCATGTGGAGCATCCCTTGACTGCTCTGATGAAACCCTCTTCAGCAGCCAGGATGAAGGGGAGGGTCAGTGCACAGGCTCTGGTGAGATGAAACTATCATGGTTGAATCGATTGCGGAGCAGGCTTACCTTTAGTTCCAGTTCCTTGTAA 2574 47.05 MEVKFKCSSCAVSSRTKFWSRLRFAVVFELVLILAWFEAANAKSQEHQLQAQGVEKGSRNVVSHSCIHDQILEQRRRPGRKVYSVTPQVYEESGISKPLHGKGRALLSVSKFSEEQEDVKEPIRIYLNYDAVGHSPDRDCRNVGDIVKLGEPPLRSSVTFAPGIPSCNPHSDPPIFGDCWYNCTLDDIAGEDKRHRLRKALGQTADWFRRALAVEPVKGNLRLSGYSACGQDGGVQLPRAYVEEGVANADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFAHFRDERKRRRAQVIEQTVDEKLGRTVTRVVLPRVVMHSRYHYGAFSENFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYHANYSMADRLDWGRNQGTEFVTSPCNLWKGAYHCNTTQSSGCTYNREAEGYCPIVSYSGDLPQWARYFPQANKGGQSSLADYCTYFVAYSDGSCTDTNSARAPDRMLGEVRGSNSRCMASSLVRTGFVRGSTTQGNGCYQHRCINNTLEVAVDGIWKVCPEAGGPIQFPGFNGELICPVYHELCSSAPVPVVGHCPNSCDFNGDCVDGRCHCFLGFHGHDCSKRSCPSNCNGHGKCLPSGVCQCVNGYTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCSDYAGYTCQNSSLLLSSLSDCREVLESDASGQHCAPSEPSILQQLEVVVVMPNYRRLFPSVARKVFNFFISGYCDAAAKRLACWISIQKCDKDGDNRLRVCHSACQSYNLACGASLDCSDETLFSSQDEGEGQCTGSGEMKLSWLNRLRSRLTFSSSSL* 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10176154 10185052 - Vvi18g890 Vvi18g890 780593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g890 857 PRINTS Leishmanolysin (M8) metalloprotease family signature 255 284 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vvi18g890 857 PRINTS Leishmanolysin (M8) metalloprotease family signature 408 437 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vvi18g890 857 ProSitePatterns EGF-like domain signature 2. 662 673 IPR000742 -
Vvi18g890 857 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 1 836 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vvi18g890 857 Gene3D Leishmanolysin domain 3 449 507 - -
Vvi18g890 857 Gene3D Leishmanolysin domain 4 509 604 - -
Vvi18g890 857 Gene3D - 116 310 - -
Vvi18g890 857 Gene3D Laminin 645 676 - -
Vvi18g890 857 Gene3D Laminin 614 643 - -
Vvi18g890 857 Gene3D Leishmanolysin , domain 2 320 445 - -
Vvi18g890 857 ProSitePatterns EGF-like domain signature 1. 662 673 IPR000742 -
Vvi18g890 857 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 120 611 - -
Vvi18g890 857 SMART egf_5 645 674 IPR000742 -
Vvi18g890 857 SMART egf_5 614 642 IPR000742 -
Vvi18g890 857 Pfam EGF-like domain 646 673 IPR013111 -
Vvi18g890 857 PANTHER METALLOENDOPEPTIDASE/ZINC ION-BINDING PROTEIN 1 836 - -
Vvi18g890 857 Pfam Leishmanolysin 181 605 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vvi18g890 857 ProSiteProfiles EGF-like domain profile. 642 674 IPR000742 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g890 K01404 GP63; leishmanolysin [EC:3.4.24.36] - vvi:100257368 1764.97
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g890 . . Bda01g00546 Bda03g00251 Bpe02g00405 Bpe04g00204 . Bma01g02303 Cmo05g00229 Cmo12g00440 . . . Car12g00464 Sed11g1006 . Cpe07g00442 Bhi04g00277 Tan02g1927 Cmetu03g1599 . Hepe10g0673 . Lcy13g2009 Cla08g01515 Cam08g2005 Cec08g1581 Cco08g1716 Clacu08g1694 . Cre08g1477 Cone4ag1890 Cone7ag1801 . . . . . Cme03g01980 . . . . . . . . . . . Cma12g00495 Cma05g00223 Car05g00185 . Cpe11g00184 . . . . . . . . . . . . . . . Lsi08g01418 Csa02g02025 Chy03g01485 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004346 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 42