Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g894 ATGATAAATGGATCTCCTCTCCCCGACAACGTTATGATAGAAGTGAATCCTTACCAGCATAACCCCTCATGTTTATCTGATAGATTTTGGTACTTAACAAGCTCTGAGGACACCAAATTTGCAGAGGGATTCTGGAAGCCCAAGGGTGAGCCCTATGAGATATTTTCGAACTCTTCTATCACTGGTTGGAGAACTACTTTTGAATTCTACGAAGGTACCACCCCACATGTCCTTAAAACCGACTGGGTGTTGCAACAGTACAAGATAACTCAGAAGGGACAGTCCAAAAACATCAAGCCAATGGCCTCCAGTTCACTCTGTAGAGTCTTCCAAAGCAGGGGACAAAGTTCAAGCCATGAAATGCAGAAGGAATTGGGGGTTGCAAATGTTGCTGATGAAAACCACACTTGTTCCAAGCCTTCTGTGGTTTCAAATACTGACAATAGCACTGGGCAAGGTTCCAAAAGCGAGTCTCAGGTGCAACATGGCAATGGTGAGACTGGACTATTGGCTGCGCCAGAAAGATCTCTGAATCACCCTGTAGACAACCTGCCTGAAATTGATTATTTTTCTGATGGTGACTTTTTGGAGTTGGGGGATCTTGCTGACCCAGTATCACCTTCTTCCAGTTCAGACAATTCTAGTTGCCTAAGCCAGACATCAGATGAATGTTTTGATTCATTAGCCTTGTTGCGAGATTTAGAATGTGACAAGGATGTGGGTTGCAAGTTTAGTGTTGCTGCATTGGTCATGCCAGACAAGGTTGTTTTGCAGCCAGCCAGTTCAGGATCTCTTACTTGTGATGACAGAAGGAAGTTACCGGCAGAAGGACCCCCCAAAACTGATAGTTCTTTACTTGGTTCAACAAAACTGTCTGAGAAGAAGGGCTTGAAGCGTGCAATTGCAACTCAGGAAGCAGACAATAAGGTGGAAGGTCCATCATCAAATCCTCATAATTTGGTGGCATCATCTGGCAGCAACAAAGCAGCATCCTCAGATGAAAAAGGGAAAGCTGCTGCTGACAGAAAGAAGAAGCTAAAGAAGTATTTGTGCTTCATGCCATTCTAG 1068 44.29 MINGSPLPDNVMIEVNPYQHNPSCLSDRFWYLTSSEDTKFAEGFWKPKGEPYEIFSNSSITGWRTTFEFYEGTTPHVLKTDWVLQQYKITQKGQSKNIKPMASSSLCRVFQSRGQSSSHEMQKELGVANVADENHTCSKPSVVSNTDNSTGQGSKSESQVQHGNGETGLLAAPERSLNHPVDNLPEIDYFSDGDFLELGDLADPVSPSSSSDNSSCLSQTSDECFDSLALLRDLECDKDVGCKFSVAALVMPDKVVLQPASSGSLTCDDRRKLPAEGPPKTDSSLLGSTKLSEKKGLKRAIATQEADNKVEGPSSNPHNLVASSGSNKAASSDEKGKAAADRKKKLKKYLCFMPF* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10213822 10217931 - Vvi18g894 Vvi18g894 780597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g894 355 Pfam No apical meristem (NAM) protein 2 88 IPR003441 GO:0003677|GO:0006355
Vvi18g894 355 SUPERFAMILY NAC domain 2 111 IPR036093 GO:0003677|GO:0006355
Vvi18g894 355 MobiDBLite consensus disorder prediction 308 331 - -
Vvi18g894 355 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 343 - -
Vvi18g894 355 Gene3D NAC domain 1 116 IPR036093 GO:0003677|GO:0006355
Vvi18g894 355 MobiDBLite consensus disorder prediction 134 164 - -
Vvi18g894 355 MobiDBLite consensus disorder prediction 260 340 - -
Vvi18g894 355 ProSiteProfiles NAC domain profile. 1 112 IPR003441 GO:0003677|GO:0006355
Vvi18g894 355 PANTHER NO APICAL MERISTEM PROTEIN, EXPRESSED 4 343 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g894 - - - vvi:100252228 707.212
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g894 . Blo12g00912 Bda01g00544 . Bpe02g00403 . . Bma01g02305 Cmo05g00232 Cmo12g00438 . . . Car12g00462 . . Cpe07g00440 Bhi04g00274 Tan02g1932 . . Hepe10g0668 . Lcy13g2006 Cla08g01512 Cam08g2001 Cec08g1577 Cco08g1713 Clacu08g1691 . Cre08g1474 . . Cone17ag1323 Cone20ag0153 . . . Cme03g01977 . . . . . . . . . . . Cma12g00491 Cma05g00225 Car05g00187 . Cpe11g00186 . . . . . . . . . . . . . . . Lsi08g01416 Csa02g02029 Chy03g01483 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003745 1 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 3 1 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14368 PF02365 NAM 5.90E-06 No_clan Vvi TF