Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g895 ATGGCGGTCGCGGAAACCAGCGACCGCTTGTCTGCGTTCCTCAGCTCAGGCATATACCGACTGGAGAGCTGCAATGCCGTGTTCATAGATCCGGTTCGTGTCCTAAACCGTTCATATTCCCGATTTAGGGTGTCTCCATCTATGTATTATTCTCGTTTCTTCGATTCCAAACACGAGGATCAGGAATCTAGGTTTTCTTCGAACTCAAGAAAGCGGAAACGCAAGGAGAAACAACCTCACGCTCTTAACGAGAGAGAGCGATCAGCTGATGAACGACACCAGGAAGCAAGGCCTTTGCTGTTGAAGGCACATGAATCTTTATTGGAAGCTACTGATCTTTTATCGGTTATCTGCAATTTAAGGAATGATGTATGTTCTTTAACAGAGAGCGAAGAATCATTGCCGATAGTTGAACAGTCTTTTGTGGAGCTTGGAAGGGTTTGGCAAGCCCCTTTGTATGAGATAATTCTTCACTTTCATCAACATTGCAACCCTTCCGGCGATGGAAGTTCCCCTCTCATACGGTATAAAGAAGAAAGGGTTATCCCAATATTTAACAACTTAGTTGTTAATGAGACAAGTGATAATGTTGAGGCTGAATTTCTGAACAGCAGATATGTAATTCCCAGAGAGAGCTGTTTCTACATGTCGGATTTAAGGCAGATTCACAACCTGATTCCTGCTGAATCTGATTGTGGCTTCAGTCTTATAGTGGTTGATCCACCTTGGGAAAACAAAAGTGCCAGTCAGAAATTGGTGTACTCAACTTTGCCGAACCGTTACTTCTTATCCCTTCCCATTAAGAAACTTACTCACACTGAAGGCGCACTTATAGCGCTATGGGTGACCAACAGGGAGAAATTGAGAGGTTTTGTTGAGAAAGAACTTTTCCCTGCATGGGGAGTCAGTTATGCAGCTACCTTTTACTGGTTGAAGGTGAAATCAGATGGCTCTTTGATCAGTGACTTAGATCTCTTTCATCATAGGCCATATGAATGCCTTCTCCTTGGCTACTGTCATGGGGAGGGGATGGATTCAGAATACCAATCAAGATTGAAACCTCTACAAGATAATCAAGTCATTATTAGCATCCCAGGGGATTATTCGAGGAAGCCCCCAATAGGAGAGTTGCTTATGGAATATGTACCAGAGCTCAAGCCTGCTCGATGTATTGAACTATTTGCTAGAGAAATGCAGGCTGGATGGATTTCTTGGGGCAATGAACCCCTCCACTTTCAGGAGTTGAGATATTTTAGAGGCACTAGGGAAAAGGGATAA 1278 43.66 MAVAETSDRLSAFLSSGIYRLESCNAVFIDPVRVLNRSYSRFRVSPSMYYSRFFDSKHEDQESRFSSNSRKRKRKEKQPHALNERERSADERHQEARPLLLKAHESLLEATDLLSVICNLRNDVCSLTESEESLPIVEQSFVELGRVWQAPLYEIILHFHQHCNPSGDGSSPLIRYKEERVIPIFNNLVVNETSDNVEAEFLNSRYVIPRESCFYMSDLRQIHNLIPAESDCGFSLIVVDPPWENKSASQKLVYSTLPNRYFLSLPIKKLTHTEGALIALWVTNREKLRGFVEKELFPAWGVSYAATFYWLKVKSDGSLISDLDLFHHRPYECLLLGYCHGEGMDSEYQSRLKPLQDNQVIISIPGDYSRKPPIGELLMEYVPELKPARCIELFAREMQAGWISWGNEPLHFQELRYFRGTREKG* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10220983 10224813 + Vvi18g895 Vvi18g895 780598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g895 425 MobiDBLite consensus disorder prediction 62 94 - -
Vvi18g895 425 ProSitePatterns N-6 Adenine-specific DNA methylases signature. 237 243 IPR002052 GO:0003676|GO:0008168|GO:0032259
Vvi18g895 425 PANTHER METHYLTRANSFERASE-LIKE PROTEIN 4 13 419 - -
Vvi18g895 425 ProSiteProfiles MT-A70-like family profile. 192 425 IPR007757 -
Vvi18g895 425 Pfam MT-A70 234 408 IPR007757 -
Vvi18g895 425 PANTHER N6-ADENOSINE-METHYLTRANSFERASE 13 419 - -
Vvi18g895 425 MobiDBLite consensus disorder prediction 79 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g895 - - - vvi:100267641 858.211
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g895 . . . . . . . . . Cmo12g00436 . . . Car12g00461 Sed10g1327 . Cpe07g00439 Bhi04g00272 Tan02g1934 Cmetu03g0596 . Hepe10g0667 . Lcy13g2005 Cla08g01511 Cam08g2000 Cec08g1576 Cco08g1712 Clacu08g1690 . Cre08g1473 . . Cone17ag1324 . . . . Cme03g01976 . Blo18g00824 . . Bpe02g01682 . Bma01g00770 . . . . Cma12g00490 . . . . . . . . . . . . . . . . . . . Lsi08g01415 Csa02g02031 Chy03g01482 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010547 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32