Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g896 ATGCATTGCTTTATTTTTAATATTCATAAAATTATCCTTTACCCACTCGCACTCTCCCTTCAACATATACCTCTTTACCCACGCAGCCACGCTCGTATCTCTCCTCAGGTACTATCATTCTCTCCACCCCCCTTCCTTTTCTCCGGAGAAGCTCTGTCTGCGGTACTTCAGCCTAACACCTTTCTCTATAGCATGAACACATTCAATTTCAAGGATTACATGATTCAGAAGGCCAGTTCGGTGCATAAAGCCTTGGACGAGGCTGTTTACGTGAAAAGCCCTATCAAAATCCATGAAGCAATGCGCTACTCTCTCCTCGCCGGCGGCAAGCGTTCCAACGCCATGCCGGCGGCTTGTGCGGTCGAAATGATTCACACTATGTCTCTGATTCACGACGACCTCCCCTGTATGGACAACGACGACCTCCGGCGAGGAAAGCCCACCAACCACAAAGTCTTCGGGGAAGACGTCGCCGTTCTGGCCGGTGATTCTCTTCTGGCATTCGCATTCGAGCACCTTGCGACTGCCACAAGCGGGGTTTCGTCATCCAGAATTGTGGCAGCCGTGGGTGAATTGGCGAAATCCATTGGAGCAGAGGGGCTAGTTGCAGGGCAGGTGGTGGATATAAGCAGTACAGGACAGTCCGATGTGGGGCTAGACCAACTGGAGTTCATACACATACACAAGACCGCGGCATTGCTGGAGGCAGCGGTGGTTCTTGGGGCCTTACTGGGAGGTGGGAGCGATGAGGAGGCAACCTACCCCAAACTAATGGGGCTGGAGAAATCAAGAGAATTTGCAGAGAATCTCAACAAGGAAGCAAAGGAACAGCTTTCTGGGTTTGATTTGGAGAAGGCAGCGCCTTTGATTGCGCTTGCTGATTATATCGCTTACCGGCAAAATTAA 906 50.88 MHCFIFNIHKIILYPLALSLQHIPLYPRSHARISPQVLSFSPPPFLFSGEALSAVLQPNTFLYSMNTFNFKDYMIQKASSVHKALDEAVYVKSPIKIHEAMRYSLLAGGKRSNAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDSLLAFAFEHLATATSGVSSSRIVAAVGELAKSIGAEGLVAGQVVDISSTGQSDVGLDQLEFIHIHKTAALLEAAVVLGALLGGGSDEEATYPKLMGLEKSREFAENLNKEAKEQLSGFDLEKAAPLIALADYIAYRQN* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10227176 10230335 - Vvi18g896 Vvi18g896 780599

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g896 301 Gene3D Farnesyl Diphosphate Synthase 252 301 IPR008949 -
Vvi18g896 301 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 65 251 - -
Vvi18g896 301 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 251 301 - -
Vvi18g896 301 Coils Coil 257 284 - -
Vvi18g896 301 Pfam Polyprenyl synthetase 111 252 IPR000092 GO:0008299
Vvi18g896 301 ProSitePatterns Polyprenyl synthases signature 1. 129 145 IPR033749 -
Vvi18g896 301 Gene3D Farnesyl Diphosphate Synthase 67 251 IPR008949 -
Vvi18g896 301 CDD Trans_IPPS_HT 97 299 IPR000092 GO:0008299
Vvi18g896 301 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE, CHLOROPLASTIC 65 251 - -
Vvi18g896 301 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE, CHLOROPLASTIC 251 301 - -
Vvi18g896 301 SUPERFAMILY Terpenoid synthases 71 282 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g896 K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] - vvi:100257359 409.068
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g896 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002369 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 60