Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g897 ATGATTAGACTCTTTAAAGAAAAGGAGAAACTGAGGGAAATTGCTGAAAGTTCAGACGGAAGAGCTCCAGTGAAGAAGCTAAGTGCAGGAGAATTACGGCTTCATAAAGATATAAGTGAGTTGAACCTACCTGAATCTTGTGGCATATCATTCCCCAATGGGAAGGATGATCTCTTGAACTTTGAGATCACTATTCGGCCTGATGAAGGATTTTATGGAGGTGGGGATTTTGTGTTCTCCTTTGAAGTTCCCCTTATGTACCCTCATGAGGCACCCAAGGTCAAATGCAAGACAAAGGTCTACCATCCTAACATTGACTTGGCAGGAAATGTCTGTCTTAACATTCTTCGGGAGGACTGGAACCCTGTCCTAAACATAAACACTATCATCTATGGACTGTATCATCTATTCACGCAACCCAGTCACGAAGACCCTCTCAATCCTGATGCAGCTGCACTGTTGAGGGCTTCTTCACAAGGATTTCAAGCTGTTGTGAGACATGTAATGACTAATGGGTATAGAGGAGAGACATATCACCCTCTATTCATGCAGCATATGAAGGCAGCATCCTACCATCAATCACGACTCAAATAA 594 42.93 MIRLFKEKEKLREIAESSDGRAPVKKLSAGELRLHKDISELNLPESCGISFPNGKDDLLNFEITIRPDEGFYGGGDFVFSFEVPLMYPHEAPKVKCKTKVYHPNIDLAGNVCLNILREDWNPVLNINTIIYGLYHLFTQPSHEDPLNPDAAALLRASSQGFQAVVRHVMTNGYRGETYHPLFMQHMKAASYHQSRLK* 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10233987 10235820 + Vvi18g897 Vvi18g897 780600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g897 197 SMART ubc_7 32 174 - -
Vvi18g897 197 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 11 173 - -
Vvi18g897 197 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 29 174 IPR000608 -
Vvi18g897 197 Gene3D Ubiquitin Conjugating Enzyme 26 180 IPR016135 -
Vvi18g897 197 SUPERFAMILY UBC-like 23 175 IPR016135 -
Vvi18g897 197 Pfam Ubiquitin-conjugating enzyme 33 167 IPR000608 -
Vvi18g897 197 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 101 116 IPR023313 -
Vvi18g897 197 PANTHER NEDD8-CONJUGATING ENZYME UBC12-LIKE-RELATED 11 173 - -
Vvi18g897 197 CDD UBCc 33 166 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g897 K10579 UBE2M, UBC12; ubiquitin-conjugating enzyme E2 M [EC:2.3.2.34] - vvi:100245559 409.068
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g555 Vvi18g897 ECH
Vvi4g922 Vvi18g897 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g897 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001287 3 4 1 2 2 2 4 2 2 2 2 2 4 1 2 3 2 4 4 2 2 2 2 2 2 1 2 4 6 3 76