Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g898 ATGACGTCAGAGAGGACGCCGACGAGGAGGAAGGCGTCGTGGAAGGAGAGGGAGAACAACATGAGGAGAGAGAGGAGGAGGAGAGCCATAGCGGCAAAGATATATGCGGGCCTCAGGGCTCAGGGCAACTATCGTCTTCCAAAACACTGCGATAACAACGAGGTCCTCAAGGCTCTCTGCTCCGAAGCTGGTTGGACCGTTGAAGATGACGGCACCACCTATCGCAAGGGATGCAAGCCTCCCCCCTCAACTGAGATTGCAGGAACTTCCACAAACAACACTCCCTGCTCTTCCCAGAAACCAAGCCCACCATCTTCCTCCTTTCCAAGCGCATTCGCTTCCTACCAACCCAGTCCCTCATCCTCAAACCTGTCTTTCATGGATGCCAATGCCTCTCTCAATCTCCTTCCATTTCTCTACAAGTCTATCCCTTCATCTCTGCCTCCTCTCCGAATATCAAACAGTGCTCCTTATATTGCTCCTGCCACTATACCTGAATATGAGGAGTCTGACACCTCAACTGTTGAGTCAGGCCAGTGGGTGAGTTTTCAGACGTTTGCACGCCATCTTGCTCCATTGCCCCCAACCTTCAATCTTATGAAACCTGTGGCTCAGAAAATTTCACCAGATGAAGCAACCAAAGAGAAGGGGATAACTCCCGAGTTGGAAATTGGAAGTGCACAGGTGAAGCCCTGGGAAGGGGAGAGGATTCATGAGATAGGTTTGGATGATCTGGAGCTTACACTAGGAAGTGGAAAGAGTAGGATTAATGAAGTGTTAATTGAATCAACATCATCTTCATGCAGCAGAAATCAACTTCTATCTAATAAGATATTCAGCCCAGTCAAGAGAAAAAAATAA 861 48.66 MTSERTPTRRKASWKERENNMRRERRRRAIAAKIYAGLRAQGNYRLPKHCDNNEVLKALCSEAGWTVEDDGTTYRKGCKPPPSTEIAGTSTNNTPCSSQKPSPPSSSFPSAFASYQPSPSSSNLSFMDANASLNLLPFLYKSIPSSLPPLRISNSAPYIAPATIPEYEESDTSTVESGQWVSFQTFARHLAPLPPTFNLMKPVAQKISPDEATKEKGITPELEIGSAQVKPWEGERIHEIGLDDLELTLGSGKSRINEVLIESTSSSCSRNQLLSNKIFSPVKRKK* 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10237357 10239107 + Vvi18g898 Vvi18g898 780601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g898 286 MobiDBLite consensus disorder prediction 1 25 - -
Vvi18g898 286 MobiDBLite consensus disorder prediction 1 26 - -
Vvi18g898 286 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 2 158 IPR033264 GO:0003700|GO:0006351|GO:0009742
Vvi18g898 286 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 160 255 IPR033264 GO:0003700|GO:0006351|GO:0009742
Vvi18g898 286 PANTHER PROTEIN BRASSINAZOLE-RESISTANT 1 2 158 - -
Vvi18g898 286 PANTHER PROTEIN BRASSINAZOLE-RESISTANT 1 160 255 - -
Vvi18g898 286 MobiDBLite consensus disorder prediction 84 114 - -
Vvi18g898 286 MobiDBLite consensus disorder prediction 71 114 - -
Vvi18g898 286 Pfam BES1/BZR1 plant transcription factor, N-terminal 9 125 IPR008540 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g898 K14503 BZR1_2; brassinosteroid resistant 1/2 - vvi:100262472 393.66
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g898 Blo01g01552 . Bda01g00543 Bda03g00253 Bpe02g00402 Bpe04g00207 Bma04g00201 Bma01g02306 Cmo05g00234 Cmo12g00435 . . . Car12g00460 Sed10g1328 . Cpe07g00438 Bhi04g00271 Tan02g1938 Cmetu03g0632 . Hepe10g0663 . Lcy13g2004 Cla08g01510 Cam08g1999 Cec08g1575 Cco08g1711 Clacu08g1689 . Cre08g1472 Cone4ag1892 Cone7ag1804 . . . . . Cme03g01975 . . . . . . . . . . . Cma12g00489 . . . Cpe11g00187 . . . . . . . . . . . . . . . Lsi08g01414 Csa02g02032 Chy03g01481 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi4g920 . 52 202 BZR Transcription Factor Family AT1G75080 56.5 3.7e-46 182.6
Vvi4g920 . 35 202 BZR Transcription Factor Family AT1G19350 52.3 1.2e-44 177.6
Vvi19g79 . 1 97 BZR Transcription Factor Family AT1G78700 87.8 2.7e-46 183.0
Vvi18g898 . 29 165 BZR Transcription Factor Family AT4G36780 62.5 5.5e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007707 2 1 1 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14369 PF05687 BES1_N 9.50E-57 No_clan Vvi TF