Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g898 ATGACGTCAGAGAGGACGCCGACGAGGAGGAAGGCGTCGTGGAAGGAGAGGGAGAACAACATGAGGAGAGAGAGGAGGAGGAGAGCCATAGCGGCAAAGATATATGCGGGCCTCAGGGCTCAGGGCAACTATCGTCTTCCAAAACACTGCGATAACAACGAGGTCCTCAAGGCTCTCTGCTCCGAAGCTGGTTGGACCGTTGAAGATGACGGCACCACCTATCGCAAGGGATGCAAGCCTCCCCCCTCAACTGAGATTGCAGGAACTTCCACAAACAACACTCCCTGCTCTTCCCAGAAACCAAGCCCACCATCTTCCTCCTTTCCAAGCGCATTCGCTTCCTACCAACCCAGTCCCTCATCCTCAAACCTGTCTTTCATGGATGCCAATGCCTCTCTCAATCTCCTTCCATTTCTCTACAAGTCTATCCCTTCATCTCTGCCTCCTCTCCGAATATCAAACAGTGCTCCTTATATTGCTCCTGCCACTATACCTGAATATGAGGAGTCTGACACCTCAACTGTTGAGTCAGGCCAGTGGGTGAGTTTTCAGACGTTTGCACGCCATCTTGCTCCATTGCCCCCAACCTTCAATCTTATGAAACCTGTGGCTCAGAAAATTTCACCAGATGAAGCAACCAAAGAGAAGGGGATAACTCCCGAGTTGGAAATTGGAAGTGCACAGGTGAAGCCCTGGGAAGGGGAGAGGATTCATGAGATAGGTTTGGATGATCTGGAGCTTACACTAGGAAGTGGAAAGAGTAGGATTAATGAAGTGTTAATTGAATCAACATCATCTTCATGCAGCAGAAATCAACTTCTATCTAATAAGATATTCAGCCCAGTCAAGAGAAAAAAATAA 861 48.66 MTSERTPTRRKASWKERENNMRRERRRRAIAAKIYAGLRAQGNYRLPKHCDNNEVLKALCSEAGWTVEDDGTTYRKGCKPPPSTEIAGTSTNNTPCSSQKPSPPSSSFPSAFASYQPSPSSSNLSFMDANASLNLLPFLYKSIPSSLPPLRISNSAPYIAPATIPEYEESDTSTVESGQWVSFQTFARHLAPLPPTFNLMKPVAQKISPDEATKEKGITPELEIGSAQVKPWEGERIHEIGLDDLELTLGSGKSRINEVLIESTSSSCSRNQLLSNKIFSPVKRKK* 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10237357 10239107 + Vvi18g898 Vvi18g898 780601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g898 286 MobiDBLite consensus disorder prediction 1 25 - -
Vvi18g898 286 MobiDBLite consensus disorder prediction 1 26 - -
Vvi18g898 286 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 2 158 IPR033264 GO:0003700|GO:0006351|GO:0009742
Vvi18g898 286 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 160 255 IPR033264 GO:0003700|GO:0006351|GO:0009742
Vvi18g898 286 PANTHER PROTEIN BRASSINAZOLE-RESISTANT 1 2 158 - -
Vvi18g898 286 PANTHER PROTEIN BRASSINAZOLE-RESISTANT 1 160 255 - -
Vvi18g898 286 MobiDBLite consensus disorder prediction 84 114 - -
Vvi18g898 286 MobiDBLite consensus disorder prediction 71 114 - -
Vvi18g898 286 Pfam BES1/BZR1 plant transcription factor, N-terminal 9 125 IPR008540 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14369 PF05687 BES1_N 9.50E-57 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g898 K14503 - vvi:100262472 393.66