Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g90 ATGTGCCGCAAACCATGGCAAAGACATTTGGTAAAAGAAAATCCGGGTTTTTGTTTCTCTGTGTATTGTGCGTTGTTTGGTGAAGCAATTTCACAGATGAGTTGCCTTCCTTGTATGAGTCCTAGGAAGAGGGACGTGAGCAGAATAGAGGACGACAATGGCACAACTGGTCCATCAAGTTCTTGCCATTCTATTGATGATTCTTTGGGGACTACAAGGGGAAAGGGTTCTTTTGATTCTAGTGACAATGGAAAGGGAAAAGGGTCTCTGAACGGTAAAGCACACCCCAAAAGCAATGCGGCCCGGAGCTTCACATTCCGGCAGCTCGCCACAGCCACAAGAAACTTTAAGGCGACAAATTTGATCGGAGAAGGAGGATTTGGAAAAGTTTACAAGGGCCGCTTAGATACCGGCGAGATTGTTGCCATCAAACAACTCAACCATGATGGACTTCAGGGGTTTCAAGAATTCATTGTGGAGGTGCTCATGTTAAGCCTCTTACACCATTCTAATCTCGTCACCTTGATCGGTTACTGCACGGATGGAGATCAAAGACTATTGGTTTACGAGTACATGGCAATGGGTAGCTTGGAGCATCATCTTTTTGATCTGGGCCCTGACCAAGAACCATTAGGATGGAACACAAGGATACAGATTGCTGTTGGTGCCGCTCGAGGCCTGGAGTATCTCCATTGCAAAGCAAATCCACCGGTGATTTACCGGGATTTGAAATCTGCAAATATATTGTTGGACAATGAATTCAATCCTAAGCTCTCAGATTTTGGGCTTGCTAAACTGGGACCTGTGGGTGACAATACTCATGTCTCAACAAGAGTGATGGGCACATATGGATACTGTGCCCCTGAGTATGCCATGAGTGGCAAACTGACTCTTAAATCTGATATCTATAGCTTTGGTGTGGTTCTCTTGGAGCTGATTACGGGCCGGAAAGCAATCGACACCTCTAAGAGGCAGGGAGAGCAGAACCTAGTTGCTTGGTCTCGTCCTTTTCTAAAAGACCGGAAAAAGTTTATACAACTGGTGGATCCCCAGCTGCAAGGGAACTTCCCGGTCCGAGCTTTGCACCATGCTATTGCCATCACTGCAATGTGTCTTCAGGAGCAACCAAACTTCCGGCCCCTTATTGGCGATATTGTTGTCGCCCTCGAGTACTTAGCCTCCGAAAGCCACAGCTCCGAACCCCATAGGAATCAGGTCAGACTCCCATCATCATCACCTTCACAAGGGAGCAGGAACAGTAACAGTTTTTTACAAGAACCATATTCTAGAAATATTTTTTAG 1302 46.24 MCRKPWQRHLVKENPGFCFSVYCALFGEAISQMSCLPCMSPRKRDVSRIEDDNGTTGPSSSCHSIDDSLGTTRGKGSFDSSDNGKGKGSLNGKAHPKSNAARSFTFRQLATATRNFKATNLIGEGGFGKVYKGRLDTGEIVAIKQLNHDGLQGFQEFIVEVLMLSLLHHSNLVTLIGYCTDGDQRLLVYEYMAMGSLEHHLFDLGPDQEPLGWNTRIQIAVGAARGLEYLHCKANPPVIYRDLKSANILLDNEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKAIDTSKRQGEQNLVAWSRPFLKDRKKFIQLVDPQLQGNFPVRALHHAIAITAMCLQEQPNFRPLIGDIVVALEYLASESHSSEPHRNQVRLPSSSPSQGSRNSNSFLQEPYSRNIF* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 836206 838752 + Vvi18g90 Vvi18g90 779793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g90 433 CDD STKc_IRAK 122 390 - -
Vvi18g90 433 MobiDBLite consensus disorder prediction 46 97 - -
Vvi18g90 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Vvi18g90 433 PANTHER OS07G0668900 PROTEIN 33 409 - -
Vvi18g90 433 SMART serkin_6 116 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g90 433 Gene3D Phosphorylase Kinase; domain 1 89 191 - -
Vvi18g90 433 ProSiteProfiles Protein kinase domain profile. 116 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g90 433 Pfam Protein kinase domain 118 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g90 433 MobiDBLite consensus disorder prediction 403 433 - -
Vvi18g90 433 SUPERFAMILY Protein kinase-like (PK-like) 99 390 IPR011009 -
Vvi18g90 433 MobiDBLite consensus disorder prediction 52 87 - -
Vvi18g90 433 PANTHER OS07G0668900 PROTEIN 33 409 - -
Vvi18g90 433 Gene3D Transferase(Phosphotransferase) domain 1 192 411 - -
Vvi18g90 433 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Vvi18g90 433 MobiDBLite consensus disorder prediction 398 433 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1175 Vvi18g90 ECH
Vvi3g293 Vvi18g90 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76398 PF00069 Pkinase 1.50E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g90 - - vvi:100266837 808.52