Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g900 ATGGTGGGTGCTGAATCCGGGAGGCCTCATGTTGCACTTCTTCCAAGCCCAGGCATGGGCCATATAATTCCCCTGTTGGAGATGGCCAAACGCTTGGTTCTCCACCATGGCTTCCATGTCAGCTTCATCACCATCACCACCGAAGCTTCAGCTGCCCAGACCCAGCTGCTCCGTTCCCCCAACCTTCCTTCCGGGCTTCACGTCGTCGAACTCCCTCCTGCTGACATGTCTACCATTCTCCATGACGACATGACGATCGTGCAACGGCTATGTCTCATTGTCCAGGAGAGCCTCCCTTATATCAGGTCCGTTCTCAGGGAGAACCCACCTCAAGCTCTCATAGTGGACATATTCTGCACCGATGCTTTCCAGATTGCCAAAGACCTTTCCATTCCCGCTTACTCCTTCTTTACTGCCCCTACGGCTTTGCTTGCCTTGTCTTTGTACCTTCCAACCATGGACCGTGAGATTGAGGGCGAGTACGTGGATCTTCCAAAGCCAGTTCAGGTCCCTGGCTGCAACGCTATTCGCACTGAAGACCTACTAGACCAGGTCCGCAACCGGAAGATTGAGGAGTACAAGTGGTACTTGTTAAGCGTCAGCCGGCTGCCCATGGCGGTTGGTATTTTCGTGAACACTTGGGAGGATCTTGAACCGGTGTGGCTACGAGGTCTGAGGGAGAACTCTTTCTTCCAGCAGATACCAATTCCACCGGTTCTTCCAATCGGACCGCTGATCAAAGAGGATGAACCACTGACTGACTTCGATAATGACTGCATTGAGTGGCTAGACAAGCAGCCACCAGACTCCGTTCTATTCATAACACTGGGTAGTGGTGGCACACTGACATCCACACAGCTCACTGAGTTGGCATGGGGCTTAGAACTCAGCCAACAACGATTCATCTTGGTGGTACGCACGCCAAGCGATGCAAGTGCGTCTGGTGCATTTTTCAACGTGGGGAATAATGTAATGAAAGCGGAGGCATATCTGCCCCAAGGGTTCATGGAAAGGACTCAAGAAGTTGGACTGGTGATCCCGTCTTGGGCTCCACAAGTGACGGTGCTCCGCCACCCCTCCACCGGCGGATTCCTCTCACACTGCGGGTGGAACTCGACCTTGGAAAGCATAAGCCACGGCGTTCCCATGATTGCGTGGCCGCTGTACGCGGAACAAAGGATGAATGCCACGATGTTGACGGAAGAGGTGGGGGTGGCAGTGCGTCCAGTGGTGGGAGAAGGGAAAAACGTAGTGGGACGGGAGGAGATAGAGAGGGTGGTGAGGTTGGTGATGGAAGGTGAAGAGGGGAAAGAGATGAGGCGTAGGGTGCGAGAGCTGCAAAGCAGTGCCCTGGCCACACTGAAACCAGGTGGGCCATCTTTTGAGGCCCTTTCTGAAGTGGCTGGGACCTGGACAACCACCGCTCATTAG 1431 54.23 MVGAESGRPHVALLPSPGMGHIIPLLEMAKRLVLHHGFHVSFITITTEASAAQTQLLRSPNLPSGLHVVELPPADMSTILHDDMTIVQRLCLIVQESLPYIRSVLRENPPQALIVDIFCTDAFQIAKDLSIPAYSFFTAPTALLALSLYLPTMDREIEGEYVDLPKPVQVPGCNAIRTEDLLDQVRNRKIEEYKWYLLSVSRLPMAVGIFVNTWEDLEPVWLRGLRENSFFQQIPIPPVLPIGPLIKEDEPLTDFDNDCIEWLDKQPPDSVLFITLGSGGTLTSTQLTELAWGLELSQQRFILVVRTPSDASASGAFFNVGNNVMKAEAYLPQGFMERTQEVGLVIPSWAPQVTVLRHPSTGGFLSHCGWNSTLESISHGVPMIAWPLYAEQRMNATMLTEEVGVAVRPVVGEGKNVVGREEIERVVRLVMEGEEGKEMRRRVRELQSSALATLKPGGPSFEALSEVAGTWTTTAH* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10250571 10252002 + Vvi18g900 Vvi18g900 780603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g900 476 CDD GT1_Gtf-like 9 448 IPR002213 GO:0008194
Vvi18g900 476 ProSitePatterns UDP-glycosyltransferases signature. 349 392 IPR035595 -
Vvi18g900 476 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 8 468 - -
Vvi18g900 476 Gene3D Glycogen Phosphorylase B; 257 455 - -
Vvi18g900 476 PANTHER GLYCOSYLTRANSFERASE 5 474 - -
Vvi18g900 476 Gene3D Glycogen Phosphorylase B; 10 460 - -
Vvi18g900 476 PANTHER UDP-GLYCOSYLTRANSFERASE 72E1 5 474 - -
Vvi18g900 476 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 345 411 IPR002213 GO:0008194
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g900 K08237 E2.4.1.218; hydroquinone glucosyltransferase [EC:2.4.1.218] - vvi:100255865 920.228
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g923 Vvi18g900 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g900 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1894 Cone7ag1806 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00426 Cam11g0477 Cec11g0472 Cco11g0466 Clacu11g0600 Cmu11g0459 Cre11g0941 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023687 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 3